Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2395 ATGAACAACACAGCACCTGATTCCTCTGGATTCCTTGGATCCAACAACATAAGTGGCTTTGGCTATGGCATAGGAATCTCAATTGGGATGCTCTTGCTCATCACAACCATCACACTCACTTCCTATTTCTGCACCAGAGCACAGGTTCCAGCACCTCCTAGGAGAAGAAATACTCCTCAATTCCTTGAGTCAGAGCATTCGATTATCGATGTGGGACTCGACGAAGACACAATTCTGAGTTACCCAAAGATGCTTTACCCTGAAGTCAAGAAGATTAACAAGTCTTATTCCACAGCAACATGCTGCTCCATTTGTCTTGGAGATTACAAGGACAGTGATATGCTTAGAGTTTTGCCTGATTGTGATCATGTGTTTCATCTCAAGTGCATAGACCCATGGCTGAGGATGAATCCTACTTGTCCTCTCTGCAGAACATCTCCAATCCCAACACCACTCTCAACTCCTCTAGCTGAAGTGGTTCCATTAGCTACCAGGCGAGATTGA 504 0.4484 MNNTAPDSSGFLGSNNISGFGYGIGISIGMLLLITTITLTSYFCTRAQVPAPPRRRNTPQFLESEHSIIDVGLDEDTILSYPKMLYPEVKKINKSYSTATCCSICLGDYKDSDMLRVLPDCDHVFHLKCIDPWLRMNPTCPLCRTSPIPTPLSTPLAEVVPLATRRD* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2395 167 Pfam Ring finger domain 102 144 IPR001841 -
Lja5g2395 167 SMART ring_2 102 143 IPR001841 -
Lja5g2395 167 PANTHER RING-H2 FINGER PROTEIN ATL70-LIKE 5 165 - -
Lja5g2395 167 SUPERFAMILY RING/U-box 83 149 - -
Lja5g2395 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 148 IPR013083 -
Lja5g2395 167 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 165 IPR045899 -
Lja5g2395 167 CDD RING-H2_PA-TM-RING 101 144 - -
Lja5g2395 167 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2395 Lja-Chr5 45591421 45592781 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2395 6 164 C3H Transcription Factor Family AT2G35910 61.585 2.75e-59 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2395 - - gmx:121172638 239.195