Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2384 ATGGAAAACGCAACCTCAACTAGAATACTGAGAACGAAGTCGGATCAGCTGATAGAGTCGATTGCCGCGGCTCTGAAGTCGTCGCCATCGAGCGGGGGCTCTGAAACGCTGTCGAGGAAGTCAAGCCGGCGATTGACGCCGGCATCGCCAGGGCGGGGGAAGAACACGCACATAAGGAAGTCTAGGAGTGCTCAGATGAAGTTTGAGGTGGATGAGTTGAGCAGCGGCGCCGCGCTCAGCCGTGCCTCCAGTGCCAGCTTGGGACTCTCATTTTCCTTCACTGGCTTCAGCATGCCTCCTGATCAAATCGCTGACTCCAGACCCTTCAGTGATGATGACATGATTCCTGAGGACATCGAAGCTGGAACTAAGACAAAGTTCAGAATGGAGCCTACTCTGCCAATATATCTTAAGTTCACAGAAGTGACCTACAAGATAGTGATAAAGGGCATGACAACAAGTGAGGAGAAGGATATCTTGCATGGGATCACAGGTTCTGTAAATCCAGGAGAAGTTCTGGCATTGATGGGTCCCTCAGGAAGTGGAAAGACAACTCTGTTAAATCTCCTCGGAGGCAGGATAAGTCACCCCACAGTTGGTGGTTCTATCACTTACAATGACCAATCATATAACAAGTTCCTCAAGAGCAGGATAGGATTCGTGACACAAGATGATGTTTTGTTTCCTCACCTAACTGTGAAAGAGACATTGACCTACGCGGCTCGTCTAAGACTGCCAAAGACATTCACAAAGGAGCAAAAGGAAAAAAGAGCTTTAGATGTCATCTATGAGCTTGGCTTGGAGAGGTGCCAAGACACTATGATTGGTGGTTCCTTTGTTCGCGGAGTATCTGGTGGAGAAAGAAAGAGAGTTTGTATTGGCAATGAGATCATAATCAACCCTTCTCTTTTGTTTCTTGATGAGCCAACATCTGGTTTGGATTCTACAACAGCCTTAAGGATCGTTCAGATGCTGCAAGACATAGCAGAGGCTGGTAAAACAGTAGTGACAACAATTCACCAACCATCAAGCAGACTCTTTCACAAATTTGACAAGTTAATCCTTCTTGGGAAAGGGAGCTTGCTCTACTTTGGAAAAGCATCAGAAGCAATGAACTATTTCCAGTCCATAGAATGTTCACCACTAATTCCAATGAACCCAGCCGAGTTTTTGCTAGACCTTGCTAATGGAAACATAAGCGATGTTTCCGTACCATCAGAGTTGGAGGATAAAGTGCAGATGGGAAATGCGGAAGCTGAAACACATAACGGGAAACCATCACCAGCAATTGTACATGAGTATCTGGTGGAGTCGTATGAAGCTCGGGTTGCAGAGAAAGAGAAGAAGAAAATAATGTCATCTGTTCCCCTTGATGAAGCATTGAAGTCTAAAGTAAGTTCTAAAAGGCAATGGGGAGCAAGTTGGGATGAACAATACTCGATATTGTTTTGGAGAGGAATCAAAGAAAGGAGACATGATTACTTTAGCTTGTTGAGAATCACCCAAGTTTTATCCACTGCAATCATCTTAGGATTGCTCTGGTGGCAATCAGATACTAAGAACCCAAAAGATCTGCAAGACCAGGCAGGGCTTCTTTTCTTTATTGCTGTCTTCTGGGGATTCTTTCCTGTTTTTACTGCAATATTCACATTTCCTCAAGAGAGAGCCATGCTGACTAAGGAAAGAGCAGCAGACATGTACAGACTAAGTGCATATTTCCTGGCTAGGACTACAAGTGACCTTCCACTAGATTTGATACTACCAGTGCTTTTTCTAGTTGTTGTTTATTTCATGGCTGGTCTGAGACTGAGTGCAAGCCCTTTTTTCCTCACAATTCTTACTGTTTTCCTCTGCATTGTGGCAGCTCAGGGACTTGGACTTGCTATTGGGGCTACACTTATGGACTTGAAAAGAGCAACAACTTTGGCTTCAGTGACTGTCATGACCTTCATGCTGGCTGGAGGATTTTTTGTACAGAAAGTCCCAATATTCATCTCTTGGATCCGGTACATGTCTTTCAACTATCACACCTACAAACTTTTGCTGAAGGTGCAATATGAACACCTCACGCCTAGCGTAAACGGGATTAAAATTGACAGTGGTAAGACAGAGGTGGCTGCTTTGATTGCCATGGTTTTTGGTTACCGTTTCTTGGCATATCTTTCTTTGCGCCGAATGAAACTTCAATCTTGA 2193 0.446 MENATSTRILRTKSDQLIESIAAALKSSPSSGGSETLSRKSSRRLTPASPGRGKNTHIRKSRSAQMKFEVDELSSGAALSRASSASLGLSFSFTGFSMPPDQIADSRPFSDDDMIPEDIEAGTKTKFRMEPTLPIYLKFTEVTYKIVIKGMTTSEEKDILHGITGSVNPGEVLALMGPSGSGKTTLLNLLGGRISHPTVGGSITYNDQSYNKFLKSRIGFVTQDDVLFPHLTVKETLTYAARLRLPKTFTKEQKEKRALDVIYELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMNYFQSIECSPLIPMNPAEFLLDLANGNISDVSVPSELEDKVQMGNAEAETHNGKPSPAIVHEYLVESYEARVAEKEKKKIMSSVPLDEALKSKVSSKRQWGASWDEQYSILFWRGIKERRHDYFSLLRITQVLSTAIILGLLWWQSDTKNPKDLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLTKERAADMYRLSAYFLARTTSDLPLDLILPVLFLVVVYFMAGLRLSASPFFLTILTVFLCIVAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVQKVPIFISWIRYMSFNYHTYKLLLKVQYEHLTPSVNGIKIDSGKTEVAALIAMVFGYRFLAYLSLRRMKLQS* 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2384 730 MobiDBLite consensus disorder prediction 24 62 - -
Lja5g2384 730 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 27 726 - -
Lja5g2384 730 ProSitePatterns ABC transporters family signature. 283 297 IPR017871 GO:0005524
Lja5g2384 730 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 137 383 IPR003439 GO:0005524
Lja5g2384 730 SMART AAA_5 169 360 IPR003593 -
Lja5g2384 730 CDD ABCG_EPDR 134 365 - -
Lja5g2384 730 PANTHER PIGMENT PERMEASE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 27 726 - -
Lja5g2384 730 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 375 IPR027417 -
Lja5g2384 730 Pfam ABC-2 type transporter 340 438 IPR043926 GO:0140359
Lja5g2384 730 Gene3D - 137 379 IPR027417 -
Lja5g2384 730 Pfam ABC transporter 160 311 IPR003439 GO:0005524
Lja5g2384 730 Pfam ABC-2 type transporter 477 686 IPR013525 GO:0016020|GO:0140359
Lja5g2384 730 MobiDBLite consensus disorder prediction 24 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2384 Lja-Chr5 45217444 45226025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2384 159 412 Calmodulin-binding Proteins AT2G36910 28.846 1.99e-15 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2384 K05681 - gmx:100798801 1229.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2384 5 45217444 45226025 Lja5g2384 5 45217444 45226025 ECH
Lja1g0609 1 5598385 5606750 Lja5g2384 5 45217444 45226025 PCT