Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2382 ATGGGTAACAATTGTGTGGGACCCAACATCAGCGGCGGAAACAGCTTCCTCCAATCCGTCACGGCGGCGGTATGGAAAACACGCCAGCCGGAGCCCAGGCTTCCGCCGCCGAATGCCGGTGACAATAGCAATTCTCACGCGCCAGCGGCGGATTCCTCTAAAGGAGGGTCGAGTACCGGCAAGGGTTCCGATTCTTCAAAACGCTCTGAAGGTTCTAGAGGTGTTGATCCCCCTCCTATGCCGGTTCAGAACACGCCGCCTGAACCGGTTAAAATAACCGCCGCGGAGACAAAACCGGCACCGGTTCAGGTACAACCGGTGCCGGTTGAGGTGCCGGTTCAGGCGGTTAAGCAGGAGGGGAATAATAGTGAATCAGCTTCTTGGAATAATGATGATGCAGGGAAAGCCAAGAAACCCACCCATGTTAAAAGAGTGTCTAGTATGGGGCTTCAAGTGGAATCTGTGTTGGGTAGAAAAACAGAAAATTTGAAGGATTTTTACAGTTTGGGGAGGAAGCTTGGACAAGGGCAATTTGGTACAACATTTCTTTGTGTGGAAAAAGGGAGCAACAAGGAGTTTGCTTGCAAATCAATTGCAAAGAGGAAATTGACAACACAGGAAGATGTTGAGGATGTGAGGAGGGAGATTCGGATCATGCACCACTTGGCTGGTCACCCCAATGTGATACAAATCATTGGGGCCTATGAGGATGCTGTTGCAGTTCATGTTGTCATGGAGCTTTGTGCTGGTGGGGAACTCTTTGATAGGATCATACAGAGAGGGCATTATAGTGAAAGAAAGGCTGCTCAACTAGCCAGGTTGATTGTCAGTGTTGTTGAGGCTTGCCACTCTTTAGGTGTCATGCATAGGGACTTGAAGCCTGAGAATTTTCTCTTCATCAACCATGAAGAAGAATCACCCCTTAAGACAATAGATTTTGGACTCTCAGTGTTCTTTAGACCAGGTGAAACATTTACTGATGTGGTTGGAAGCCCTTACTATGTCGCGCCTGAAGTTTTGCGGAAGCACTATGGTCCAGAATGTGATGTTTGGAGTGCTGGGGTAATCATTTATATTTTATTGAGTGGAGTCCCCCCATTTTGGGATGAAACGGAACAAGGAATATTTGAGCAAGTTTTGAAAGGAGAGCTTGACTTTATTTCTGACCCATGGCCAAACATATCTGAAAGTGCAAAGGACCTTGTTCGAAGAATGCTTATAAGAGACCCTAAGAAGCGGATGACGGCACATGAAGTTCTTTGCCACCCCTGGGTTCAGGTTGAAGGTGTTGCTCCTGATAAACCACTTGATTCTGCTGTTTTATCTCGTTTGAAGCAATTCTCTGCAATGAACAAGCTAAAAAAAATAGCTATTCGAGTGATTGCTGAAAATCTGTCTGAGGAGGAAATTGCAGGACTGAAAGAAATGTTCAAGATGATCGACACAGATAACAGCGGACAGATCACTCTTGAGGAACTGAAAAATGGATTGGAGAGAGTTGGCGCCGCTCTTAAGGATTCTGAACTTCATTGGTTAATGCAAGCGGCTGACATTGATAACAGTGGTACCATAGACTATGGTGAATTCCTAGCTGCTATGCTCCATCTAAACAAGGTTCAGAAAGAGGATCATCTCTTTGCAGCCTTCTCCTACTTTGACAAAGATGGGAGCGGATACATTACACGGGATGAGCTCCAACAAGCTTGTGAACAGTTTGGCCTGAAGGATGTTCATCTAGATGATATAATACGCGAAGTTGACCAGGATAATGATGGACTCATTGATTACAATGAGTTTGCTGCAATGATGCAAGACACTAATTTTGGCAAAATGGGTCTATAG 1842 0.4571 MGNNCVGPNISGGNSFLQSVTAAVWKTRQPEPRLPPPNAGDNSNSHAPAADSSKGGSSTGKGSDSSKRSEGSRGVDPPPMPVQNTPPEPVKITAAETKPAPVQVQPVPVEVPVQAVKQEGNNSESASWNNDDAGKAKKPTHVKRVSSMGLQVESVLGRKTENLKDFYSLGRKLGQGQFGTTFLCVEKGSNKEFACKSIAKRKLTTQEDVEDVRREIRIMHHLAGHPNVIQIIGAYEDAVAVHVVMELCAGGELFDRIIQRGHYSERKAAQLARLIVSVVEACHSLGVMHRDLKPENFLFINHEEESPLKTIDFGLSVFFRPGETFTDVVGSPYYVAPEVLRKHYGPECDVWSAGVIIYILLSGVPPFWDETEQGIFEQVLKGELDFISDPWPNISESAKDLVRRMLIRDPKKRMTAHEVLCHPWVQVEGVAPDKPLDSAVLSRLKQFSAMNKLKKIAIRVIAENLSEEEIAGLKEMFKMIDTDNSGQITLEELKNGLERVGAALKDSELHWLMQAADIDNSGTIDYGEFLAAMLHLNKVQKEDHLFAAFSYFDKDGSGYITRDELQQACEQFGLKDVHLDDIIREVDQDNDGLIDYNEFAAMMQDTNFGKMGL* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2382 613 SUPERFAMILY EF-hand 454 605 IPR011992 -
Lja5g2382 613 MobiDBLite consensus disorder prediction 38 65 - -
Lja5g2382 613 MobiDBLite consensus disorder prediction 21 89 - -
Lja5g2382 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 287 299 IPR008271 GO:0004672|GO:0006468
Lja5g2382 613 MobiDBLite consensus disorder prediction 119 145 - -
Lja5g2382 613 ProSitePatterns EF-hand calcium-binding domain. 517 529 IPR018247 -
Lja5g2382 613 ProSiteProfiles EF-hand calcium-binding domain profile. 540 575 IPR002048 GO:0005509
Lja5g2382 613 Pfam EF-hand domain pair 473 533 IPR002048 GO:0005509
Lja5g2382 613 Pfam EF-hand domain pair 543 604 IPR002048 GO:0005509
Lja5g2382 613 Gene3D - 450 609 - -
Lja5g2382 613 ProSiteProfiles EF-hand calcium-binding domain profile. 504 539 IPR002048 GO:0005509
Lja5g2382 613 CDD STKc_CAMK 166 424 - -
Lja5g2382 613 SMART serkin_6 167 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2382 613 ProSitePatterns EF-hand calcium-binding domain. 481 493 IPR018247 -
Lja5g2382 613 ProSitePatterns Protein kinases ATP-binding region signature. 173 200 IPR017441 GO:0005524
Lja5g2382 613 PANTHER SERINE/THREONINE-PROTEIN KINASE 106 606 - -
Lja5g2382 613 ProSiteProfiles EF-hand calcium-binding domain profile. 468 503 IPR002048 GO:0005509
Lja5g2382 613 ProSitePatterns EF-hand calcium-binding domain. 587 599 IPR018247 -
Lja5g2382 613 CDD EFh 544 604 IPR002048 GO:0005509
Lja5g2382 613 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 2 106 606 - -
Lja5g2382 613 Pfam Protein kinase domain 167 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2382 613 ProSitePatterns EF-hand calcium-binding domain. 553 565 IPR018247 -
Lja5g2382 613 Gene3D Transferase(Phosphotransferase) domain 1 253 449 - -
Lja5g2382 613 SUPERFAMILY Protein kinase-like (PK-like) 154 444 IPR011009 -
Lja5g2382 613 CDD EFh 473 533 IPR002048 GO:0005509
Lja5g2382 613 SMART efh_1 578 606 IPR002048 GO:0005509
Lja5g2382 613 SMART efh_1 472 500 IPR002048 GO:0005509
Lja5g2382 613 SMART efh_1 508 536 IPR002048 GO:0005509
Lja5g2382 613 SMART efh_1 544 572 IPR002048 GO:0005509
Lja5g2382 613 ProSiteProfiles Protein kinase domain profile. 167 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2382 613 Gene3D Phosphorylase Kinase; domain 1 169 252 - -
Lja5g2382 613 ProSiteProfiles EF-hand calcium-binding domain profile. 578 609 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2382 Lja-Chr5 45153263 45158660 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2382 1 613 EF-hand Containing Proteins AT2G38910 72.757 0.0 904
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lja5g2382 Pkinase 1.1e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2382 K13412 - gmx:100813232 998.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2382 5 45153263 45158660 Lja5g2382 5 45153263 45158660 ECH
Lja1g0616 1 5670373 5673340 Lja5g2382 5 45153263 45158660 PCT