Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2379 ATGGCTTCCCCTTCCAAACCCCACGTTGTGGAGGACTGCGACGGTTTCCTCCAACTCTACAGCGACGGCACCGTCTCACGCTCCGACATGCAATTCCAAGACATTACCCCAACCCAACAAGACCACCTTGTAACATTCAAAGACTACCTCTTCCTTGAAAAATTCAACCTCCACATTCGTCTCTACAAACCCACACCAATATCAAACAGCAACAACAAAACCCTACCTGTGATCATGTTCCTCCACGGTGGCGGCTTCTGCTTCGGCTCCCGCACGTGGCCCCACTTGCACACGTGCTGCATGCGCCTCGCCTCGGGTCTCCGTGCCGTTGTCGCCGCGCCGGACTACCGCTTGGCACCGGAGCACCGCCTTCCCACCGCGGTGGACGATGCTGCTGAGGCCGTGAAGTGGCTGCAGAGGCGGGGCTTCGGCGGGGATGCGTGGCTGAGTGAGGGGGTTGACTTTGACCGCTTGTTTGTTGTGGGTGATTCCTCTGGCGGGAACATTGCGCACCACCTTGCGGTTCGGTTCGGTCATGGTTCGGAGGAGGTGGACCTGGTTCGGGTACGAGGTTATGTGCTGCTGAGCCCATTTTTCGGTGGAGTGGCTCGAACAAGGTCGGAGGAGGGTCCCCTGGAGAAAACACTCAGCCTGGAGATACTGGACAGATTATGGAGGTTGTCTCTGCCTATTGGAGAAACCAGAGACCACCCACTGGCGAACCCATTTGGACCTGAGAGTCCAAACCTTGGACATGTGAAGCTTGACCCTATTTTAGTAATAATTGGTGGCAATGAATTACTGAAGGACAGAGCAGCAGACTACGCAACAAAGTTAAAAGAACTAGGGAAGAACATTGAATATGTTGAGTTTGAGGGGAGGGAACATGGTTTTTTCACTCATGATTCGGACTCAGAGGTTGTAGAAGAGGTGGTGCAAATCCTTAAGCGATTCATGCTTGAAAATTCTAATTAA 975 0.5323 MASPSKPHVVEDCDGFLQLYSDGTVSRSDMQFQDITPTQQDHLVTFKDYLFLEKFNLHIRLYKPTPISNSNNKTLPVIMFLHGGGFCFGSRTWPHLHTCCMRLASGLRAVVAAPDYRLAPEHRLPTAVDDAAEAVKWLQRRGFGGDAWLSEGVDFDRLFVVGDSSGGNIAHHLAVRFGHGSEEVDLVRVRGYVLLSPFFGGVARTRSEEGPLEKTLSLEILDRLWRLSLPIGETRDHPLANPFGPESPNLGHVKLDPILVIIGGNELLKDRAADYATKLKELGKNIEYVEFEGREHGFFTHDSDSEVVEEVVQILKRFMLENSN* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2379 324 Coils Coil 265 285 - -
Lja5g2379 324 PANTHER ARYLACETAMIDE DEACETYLASE 6 320 - -
Lja5g2379 324 Pfam alpha/beta hydrolase fold 78 299 IPR013094 GO:0016787
Lja5g2379 324 PANTHER CARBOXYLESTERASE 15-RELATED 6 320 - -
Lja5g2379 324 Gene3D alpha/beta hydrolase 16 323 IPR029058 -
Lja5g2379 324 SUPERFAMILY alpha/beta-Hydrolases 7 319 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2379 Lja-Chr5 45011062 45013358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2379 9 318 Carbohydrate Esterase AT5G16080 33.229 5.44e-55 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2379 - - gmx:100801473 492.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2379 5 45011062 45013358 Lja5g2379 5 45011062 45013358 ECH
Lja1g0601 1 5517889 5522098 Lja5g2379 5 45011062 45013358 PCT