Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2347 ATGTCGGTTTTATCAAGCATGGAGCTGCCTACAACTAATGTGGATCTTAGTCCTGAGAAGATTAAAGATGAGAAAGAGGGAGGTCCCATGATCCATTGTGATCTCTGTGACACAGAAGTAATTCACAAGATGGCTCAAATGTTCGTACCGGGACTAGCCTCTGCCTGCGTTGATAACACAACGGGAGATCCCTTCAAGACTCCTGGTTCAGTGGTTAATGATCTGAGGAAGGATATGATTGATTACCTTACCCAGAGAAGTGAATCGTTTGTTGCCGAGTCTGTTATCTTAGAAGGTACTGGTCCGGATGATGAAGTGTCGGATCATCCTTTTGACATTGTTTCTTATTTCGTCGATGACTTTGTAGATTCAAAGAGGAATTTGTTTAGTAAGGTTTCAGGGTGGCTCCTAAGCGACAAGAGAGAAGACAAGATAGATGATTTTGTGCAGGAGATAGAAATGAATGGTTTTTGGTCGCTAGATAGAAGAGAAACGATAGCAGAAACTTTGCTTAAGAATGTTGACTTCAAGAACTTATTTCATTGCAGCATGAAATTTAATTCAGCTGAAGATCTTGCCAAACATACTGAGAAGTGCAACTTCAAACCTATGATCTGCCAGAATGAGGGATGTAATAACAGATTTAGCACACGTCATTTGAAGGAGCATGATTCAACTTGTCCTTTCAAGATAATTCCCTGTGAACAGAAATGTACCGATAGCTTAATGAGGCGTCAGATGGACAGGCACTGCATAACTGAATGTCCAATGAAGCTTGTGAATTGTCCTTTCTATTCAGTGGGGTGTCGATCTGCTATCTCACAATGTATGATTGAAAAACATTGTGCAGATGACCTTCATTCTCACTTATTGCACATCCTTAAAGGCATACATAGGGAAGCATCTGGTGAAGATCTTAAAAGACGAGTAGAGCAAATTGTACAGGCATCATCAAGCAGCAGTTTAGCAGAGGCTAAGGAAGTGAGATCTTTAAAAAATATCGTCAAAGCTCTGGAAGCTAAGCTAGGACCTTTGGAAGTGAGTGCGGAGAAAACTAGTGCAGAAACAGCTTCCATGAATGAAGATAGTGAAGATAGAAGCACCGGAACAAAGGGCGGTGAGCAGAGCTTACAAGCTTTAAATTCACCAGACAAAGTTGAAGTGAGTGCTATCTTGAATAAGAATAGTGCAGAAAATGCTGTGAATAATGAAGACAGTAAAACATGA 1227 0.4067 MSVLSSMELPTTNVDLSPEKIKDEKEGGPMIHCDLCDTEVIHKMAQMFVPGLASACVDNTTGDPFKTPGSVVNDLRKDMIDYLTQRSESFVAESVILEGTGPDDEVSDHPFDIVSYFVDDFVDSKRNLFSKVSGWLLSDKREDKIDDFVQEIEMNGFWSLDRRETIAETLLKNVDFKNLFHCSMKFNSAEDLAKHTEKCNFKPMICQNEGCNNRFSTRHLKEHDSTCPFKIIPCEQKCTDSLMRRQMDRHCITECPMKLVNCPFYSVGCRSAISQCMIEKHCADDLHSHLLHILKGIHREASGEDLKRRVEQIVQASSSSSLAEAKEVRSLKNIVKALEAKLGPLEVSAEKTSAETASMNEDSEDRSTGTKGGEQSLQALNSPDKVEVSAILNKNSAENAVNNEDSKT* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2347 408 MobiDBLite consensus disorder prediction 349 408 - -
Lja5g2347 408 MobiDBLite consensus disorder prediction 370 408 - -
Lja5g2347 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 222 287 IPR013083 -
Lja5g2347 408 Pfam TRAF-type zinc finger 223 281 IPR001293 GO:0008270
Lja5g2347 408 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 4 363 IPR043211 -
Lja5g2347 408 SUPERFAMILY TRAF domain-like 182 234 - -
Lja5g2347 408 PANTHER NEUROFILAMENT HEAVY POLYPEPTIDE-LIKE 4 363 - -
Lja5g2347 408 ProSiteProfiles Zinc finger TRAF-type profile. 223 270 IPR001293 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2347 Lja-Chr5 43424723 43429090 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja5g2347 zf-TRAF 3.2e-10 CL0389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2347 - - gmx:100802183 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2347 5 43424723 43429090 Lja5g2347 5 43424723 43429090 ECH
Lja1g0590 1 5387390 5390132 Lja5g2347 5 43424723 43429090 PCT