Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2338 ATGGATTGCAAGAGAATCCAAAGCAGCTCTTCCCCTCAGATGAAATGGAAATATGACCTGTTTGTGAGTTTCAGAGGTGAAGACACACGAAACAACTTCACTGATCATCTTTTTGGTGCTTTCCAAAGAAAAGGTTTTGTTACTTTTAGGGATGACTCTAAGCTCAGGAAAGGGGAACATATATCCACAGAGCTTCTACAAGCAATTGAAGGATCTCGAATTTTGATTGTGGTCTTCTCAAAAAACTATGCTTCTTCCACTTGGTGCTTGCAAGAACTGGCAAAGATTTCTGAGTGTATTGAAGTACCAGGACAAACTGTGCTGCCTATTTTCTATGATGTAAGTCCATCTGAGGTGCGGAAACAAAGCAGGAATTATGAAAAAGCTTTTGTGGAGCATGAAGGAAGATTTAAACAACATTTAGTGATAGTTCAAAGATGGAGGGATGCTCTAGCACAGGTAGCAAATCTCTCTGGCTGGGATGTAAGGGACAGGCCACAATATGCAGAGATTGGAAAAATTGTTCGAGAGGTAGCATGCACATTAGGTCATAATCTTTCAACTCTACCAGAAGATATAGTTGGTTTGGACTCACGGGTGGAAGAATTAGAAAAGCTTCTGGATTTGCATGTCTTGAGAGCATATAAAGTGGATGAAGTTTACAAGGTTCAACTGTTGAATTATCATAATGCTCATCAATTGTTTTGTATAAAAGCTTTTGAATCAATTAAAGTATTGGGTTCCTTTTTGTTTGGTCGAGATGTGTCTGAATGGAGAAATGCACTGGTCAGACTAAGAGAAAATCCAAGAAAAGATATTATGGATGTGCTTCGAATTAGTTTCGATGCATTGGAAAACACGGAAAAAGAAGTATTCTTAGATATCGCTTGTTGCTTTTATGATGAACGGGAGGAATATCTGAAGGAAGTTCTAGATTTTCGTGGATTTTTTCCTGAAGTTGGTTTAAGAGTTCTCATTGATAAATCACTCATAAGTAGTGAGAAGGGGCTTATTCGAATGCATGAATTGTTGAGAGAGCTAGGAAGGAGCATTGTTCGAGAAAAATCACCCAAAGAACCAAGACAGTGGAGCCGGTTGTGGGACTACAAGGATCTGCACAATGTTATGTTAGAAAATATGGAAGCAGAAAATCTTGAAGTCATAATCCTGCAAAGGTATCCACCCAAGATTCCAGAAACAACAATTAGGGCTGATGGATATCTTTCTTGGGAAAAATATCCTTTCACATGTTTGCCATCAAGATTTCAGCCTCATAAACTGGTTAAATTGGTCTTGCCTCACAGCAGTATCAAACAGCTATGGGAAGACTCGAAGCCTCTGCACAATTTGACACATATTGATCTCTCTCACTCGAAGAATCTTACTAAAATGCCAGATTTTGGAGAGGTCCCAAATCTTGAGATACTAGATCTTGAAGGATGTATAAAACTTGCGCAGATCGATCCATCAATTGGCACTTTGAAAAAGCTTATTGTTTTGAACTTGAAAAATTGTGCACATGCAACCCTCTTTCTCCCATGGTGGATGTGGATGGAATTGGCAACCATGACCGAGCATCCCCAAGGTTTGCATTTGGAGGTGAAAGAGTGCGGGTATCGTTGGGTATTTAAGGAGGATCTGGAACAATTAAACCCTGAAATGATGTATAGTGGAAAATCATCAGCTTGGAAGCACAAGTTCATAACAGATGACTAG 1716 0.3934 MDCKRIQSSSSPQMKWKYDLFVSFRGEDTRNNFTDHLFGAFQRKGFVTFRDDSKLRKGEHISTELLQAIEGSRILIVVFSKNYASSTWCLQELAKISECIEVPGQTVLPIFYDVSPSEVRKQSRNYEKAFVEHEGRFKQHLVIVQRWRDALAQVANLSGWDVRDRPQYAEIGKIVREVACTLGHNLSTLPEDIVGLDSRVEELEKLLDLHVLRAYKVDEVYKVQLLNYHNAHQLFCIKAFESIKVLGSFLFGRDVSEWRNALVRLRENPRKDIMDVLRISFDALENTEKEVFLDIACCFYDEREEYLKEVLDFRGFFPEVGLRVLIDKSLISSEKGLIRMHELLRELGRSIVREKSPKEPRQWSRLWDYKDLHNVMLENMEAENLEVIILQRYPPKIPETTIRADGYLSWEKYPFTCLPSRFQPHKLVKLVLPHSSIKQLWEDSKPLHNLTHIDLSHSKNLTKMPDFGEVPNLEILDLEGCIKLAQIDPSIGTLKKLIVLNLKNCAHATLFLPWWMWMELATMTEHPQGLHLEVKECGYRWVFKEDLEQLNPEMMYSGKSSAWKHKFITDD* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2338 571 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 243 387 - -
Lja5g2338 571 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 407 448 - -
Lja5g2338 571 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 457 552 - -
Lja5g2338 571 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 12 205 - -
Lja5g2338 571 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 160 IPR035897 -
Lja5g2338 571 Gene3D - 12 187 IPR035897 -
Lja5g2338 571 Gene3D - 242 285 IPR042197 -
Lja5g2338 571 ProSiteProfiles TIR domain profile. 16 182 IPR000157 GO:0007165
Lja5g2338 571 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 295 IPR027417 -
Lja5g2338 571 SUPERFAMILY "Winged helix" DNA-binding domain 272 375 IPR036390 -
Lja5g2338 571 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 457 552 IPR044974 GO:0006952
Lja5g2338 571 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 407 448 IPR044974 GO:0006952
Lja5g2338 571 SUPERFAMILY L domain-like 395 514 - -
Lja5g2338 571 SMART till_3 17 157 IPR000157 GO:0007165
Lja5g2338 571 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 243 387 IPR044974 GO:0006952
Lja5g2338 571 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 205 IPR044974 GO:0006952
Lja5g2338 571 Pfam TIR domain 17 160 IPR000157 GO:0007165
Lja5g2338 571 Gene3D Ribonuclease Inhibitor 354 526 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2338 Lja-Chr5 42574412 42578019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2338 208 511 WRKY Transcription Factor Family AT5G45050 30.446 2.39e-42 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2338 - - lja:Lj0g3v0252649.1 459.529