Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2337 ATGGCAGTGACACGCTCACTCCCACTCCGCTTGGCCATTTCACACTTCACTAAACCATTTCACCACTTCTCCTTCTCTACCTCCACCACCGCACCGCCACAACACCCTCCTCCCATCCGAGTCGCTCTCACTGACTCAGTCGGCCGCGCCGTCTTCGCAACTCGCCCGATCCCTTCCGGTGATCTCATCCACACCGCCCAACCCGCCGTCTGCCACCCTTCTCCCTCCGCCGTCCACTCCGTCTGCTATTCCTGCCTCGCCTCTCTGTCCTCATCAATACCCCAATGCACCCCGTTTTGCAGCCACCATTGCCACCAACGCTCTAAGGACTATTACGATGTTGAGATGAAAGCGAATTGGATGGACTTTGATAACTATTGCCGGACCCGTGGTTTGAAATATCCATTTATGGTAAAGAGGTTGGCTTGTATGGTCGTATCAGGAGTTTCCAAAAGTGACAGTCTTGACATACTTCAGCCTGCCAATTTGACACCTGAGATGATTTTAGAGATGGAGGAGGAGTTTTCCTTGCTAAGGAGTGCCTTCACGAAGGCACTTATTGCGGATGAACATATTGCTTTTTTGACCAAGCAATGGTACATTAATGTTTTGGCCCGAATTCGAATCAATGCATTTCGCATTGAATTGGCTGGTGGACTATATGAAGATCTCCTTGCATCAGCAGTTGCATCTGTAGAAGCTGAAGCTGCTGTTGGAAATGCTGTCTATATGCTTCCTTCCTTCTATAATCATGATTGTGATCCTAATGCACATATTATATGGATAGACAATGCAGATGCAAAATTGAAGGCCCTCCGTGACATTGATGAAGGTGAAGAACTCAGAATCTGCTATATCGATGCCAGCCTGGACCGTGATGCTAGGCGAGAACTATTATTTCGAGGTTTTGGCTTTCAATGCAATTGTAGTAGGTGCTTGCATGGCGATTAG 951 0.4816 MAVTRSLPLRLAISHFTKPFHHFSFSTSTTAPPQHPPPIRVALTDSVGRAVFATRPIPSGDLIHTAQPAVCHPSPSAVHSVCYSCLASLSSSIPQCTPFCSHHCHQRSKDYYDVEMKANWMDFDNYCRTRGLKYPFMVKRLACMVVSGVSKSDSLDILQPANLTPEMILEMEEEFSLLRSAFTKALIADEHIAFLTKQWYINVLARIRINAFRIELAGGLYEDLLASAVASVEAEAAVGNAVYMLPSFYNHDCDPNAHIIWIDNADAKLKALRDIDEGEELRICYIDASLDRDARRELLFRGFGFQCNCSRCLHGD* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2337 316 SUPERFAMILY SET domain 36 312 IPR046341 -
Lja5g2337 316 ProSiteProfiles SET domain profile. 37 286 IPR001214 GO:0005515
Lja5g2337 316 Gene3D SET domain 50 312 IPR046341 -
Lja5g2337 316 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD3 44 313 - -
Lja5g2337 316 CDD SET_SMYD 239 312 - -
Lja5g2337 316 Gene3D - 81 128 - -
Lja5g2337 316 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 44 313 - -
Lja5g2337 316 SMART set_7 37 292 IPR001214 GO:0005515
Lja5g2337 316 Gene3D - 129 211 - -
Lja5g2337 316 Pfam SET domain 48 285 IPR001214 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja5g2337 SET 4.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2337 - - lja:Lj0g3v0252639.2 636.336