Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2333 ATGTCTGCGACAATGGGAACTTCATGGGCGGATTCTGCTGACAATTCAGCCATTGGTTCTTCCAATGCCAATGCCTCATCGGGCCGCCCAGCGTATGTTCCTCCGCATCTTCGCAACCGGCCGTTGTCTTCGGAGCCCCCTGCTGCGACATCACAATCCTACGACCGGGGGAATTATGGTGCTCCGGCTGCAGGTCCTCATGGAGGCGGCTTCTCGAGGCCTGATTTTGGTCGGCAAGGATATGGTTCAGCTGCCCAGACCGGTGGTGGTTGGAATAGTAGAGGGGTGGGGAGGGACCGTGGGAGGCGTGAGGTGAATCCTTTTGAGAATGATGATAATGATGTGGATCAATCTGTCGGTGAGCAAGAGAACACGGGCATTAATTTTGAGGCGTATGATGATATTCCTGTGGACACTAGTGGGGAGAATGTGCCCCCACCTGTGAACACATTCGCGGAAATAGATTTGGGGGATGCATTGAATCAGAACATACAGAGATGCAAGTATGTCAAACCAACCCCGGTTCAAAGGTACGCCATACCAATTTCTCTTGCGGGGAGAGATTTGATGGCTTGTGCTCAGACAGGGTCGGGAAAGACAGCTGCCTTTTGCTTTCCTATTATAAGTGGAATCATGAGGGAGCAGTATATTCAAAGACCACGTGTTGCACGAACTGCCTTCCCTATGGCACTTATCCTCTCTCCTACCCGGGAGCTTTCATGTCAGATCCATGATGAGGCCAAAAAGTTTTCTTATCAAACTGGTGTCAAGGTTGTAGTTGCTTATGGAGGAGCACCAATCACCCAACAGTTGCGAGAGCTTGAGAGAGGAGTTGATATTCTGGTGGCGACTCCTGGACGACTGGTAGATTTGCTTGAGAGGGCTAGGGTTTCATTGCAGATGATAAGATATTTGGCTCTTGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATTAGAAAGATAGTTGAACAAATGGACATGCCTCCTCCGGGCATGAGACAGACAATGCTGTTTAGTGCCACATTTCCAAAAGAGATACAGAGACTTGCATCAGATTTTCTTGCAAATTATGTGTTTTTGGCTGTTGGAAGGGTCGGTTCAAGTACTGATCTAATTGCTCAAAGAGTAGAATATGTGCTCGATTCAGACAAGAGAAGCCACCTTATGGACCTGCTTCATGCTCAGAGGGAAAATGAAACTTTTGGCAAGCAAGGTCTGACATTGGTTTTTGTGGAAACAAAGAAAGGAGCTGACGCATTGGAGCACTGCTTGTGTGTTAATGGGTTTCCTGCAACTTGCATTCATGGTGACAGAACACAACAAGAAAGAGAAATGGCACTGAGGTCATTCAAGAGTGGACACACACCAATTCTAGTGGCAACAGATGTTGCAGCACGTGGTCTTGATATTCCTCGAGTATCACATGTGGTAAATTTTGATCTTCCCAATGACATTGATGATTATGTGCACCGGATAGGAAGAACCGGGCGTGCTGGTAAAATGGGATTAGCAACAGCCTTCTTCAATGAAGGTAATTTATCCATGGCTAAACCATTGGCTGATCTGATGCAAGAGGCGAATCAAGAAGTACCTGCCTGGCTCACCCGTTACGCAGCAAAGGCTTCTTACGGTGGCGGTGGCAACAGAAGCAAGCGGTCAGGGGGAGCCCGTTTCGGTGGCCGTGATTTCAGGAAGGAGGGTTCATACAATAATAAAGGATCAGATTACTATGGTGGAACTGGTGGATATGGTGGTGTTCCTGGCAGCTATGGTGGAGGAGGAGGAGGGTATGGTGGTCAAGGTGTGACTAGTGCTTGGGATTAG 1836 0.4826 MSATMGTSWADSADNSAIGSSNANASSGRPAYVPPHLRNRPLSSEPPAATSQSYDRGNYGAPAAGPHGGGFSRPDFGRQGYGSAAQTGGGWNSRGVGRDRGRREVNPFENDDNDVDQSVGEQENTGINFEAYDDIPVDTSGENVPPPVNTFAEIDLGDALNQNIQRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMREQYIQRPRVARTAFPMALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPITQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYVFLAVGRVGSSTDLIAQRVEYVLDSDKRSHLMDLLHAQRENETFGKQGLTLVFVETKKGADALEHCLCVNGFPATCIHGDRTQQEREMALRSFKSGHTPILVATDVAARGLDIPRVSHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNEGNLSMAKPLADLMQEANQEVPAWLTRYAAKASYGGGGNRSKRSGGARFGGRDFRKEGSYNNKGSDYYGGTGGYGGVPGSYGGGGGGYGGQGVTSAWD* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2333 611 Pfam DEAD/DEAH box helicase 173 353 IPR011545 GO:0003676|GO:0005524
Lja5g2333 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 229 520 IPR027417 -
Lja5g2333 611 Gene3D - 105 366 IPR027417 -
Lja5g2333 611 SMART ultradead3 168 379 IPR014001 -
Lja5g2333 611 MobiDBLite consensus disorder prediction 96 110 - -
Lja5g2333 611 MobiDBLite consensus disorder prediction 1 28 - -
Lja5g2333 611 Pfam Helicase conserved C-terminal domain 388 503 IPR001650 -
Lja5g2333 611 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 391 542 IPR001650 -
Lja5g2333 611 SMART helicmild6 422 503 IPR001650 -
Lja5g2333 611 MobiDBLite consensus disorder prediction 1 120 - -
Lja5g2333 611 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED 37 579 - -
Lja5g2333 611 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 149 177 IPR014014 GO:0003724
Lja5g2333 611 CDD SF2_C_DEAD 376 512 - -
Lja5g2333 611 MobiDBLite consensus disorder prediction 548 568 - -
Lja5g2333 611 CDD DEADc_DDX3_DDX4 150 370 IPR044763 GO:0003724|GO:0005524
Lja5g2333 611 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 180 364 IPR014001 -
Lja5g2333 611 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 37 579 - -
Lja5g2333 611 Gene3D - 367 547 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2333 Lja-Chr5 42428341 42435254 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2333 147 535 Eukaryotic Initiation Factors Gene Family AT3G19760 30.769 1.84e-59 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2333 K11594 - gmx:100800039 945.266
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2333 5 42428341 42435254 Lja5g2333 5 42428341 42435254 ECH