Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2321 ATGGACAAGACCACTGAAAGAGAAACCCATGACTTCATGAACGTTGAGTCATTCTCTCAGCTCCCCTTCATCCGCCCGGCACCCGCCACCGCCGCCAAGGAAAAGGGCATTCGCCTCTTCGGCATTGAATTCGGCTCTTCCGAGTCTGACTCACCTGAAACAACCACCACCACCAACAACAACACACTGTTCGAGCTTGACAACAACAACAAGGAGGATAACAACACAAACAACAGCAGCACTGACAACAACAACAACGGAGAGAGCAGCCGCCGGTTCGAATGCCACTACTGCTGCAGAAACTTCCCCACTTCTCAAGCCTTAGGCGGCCACCAGAACGCTCACAAACGAGAGCGGCAGCACGCGAAGCGCGCACACCTTCAGTCCGCCATGGTCCACGGCGGCACCTTCTCCTCTGACCCTCACCTCTACCCTCTCATCAACTACAGGTTCAACTCAGCTCCAACTATGCCTTCTTATCCAACATGGAACACCACCACGACCTCCTCAAATGCCATCACCACCCCCAGTAGTGGAAGGTTTTATGGAAGCTCTTATAATTCTCATTCTCAACCCATTAATGGAAGCCCCTTGGCGTTTTGGCGGATCCCAAACAGCACAATTCAGAGTAGTAGTACTAATAGTACTAACCCTAACACTTCTTTCCACCACGACCGCTCCTTGTTGCAGCACCACCACCATCACCATCACTTGCCCTTGCTTGCTGGCGATGAAATAAACACTGCAAGGGCGGTTGGACCCTCCGGTTCGCAAAACCCGTTCGCTTATGACTCCAAACGCGGTGTCCACGATCACGTCAGCCTGGATCTTCACCTCTAA 840 0.525 MDKTTERETHDFMNVESFSQLPFIRPAPATAAKEKGIRLFGIEFGSSESDSPETTTTTNNNTLFELDNNNKEDNNTNNSSTDNNNNGESSRRFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAHLQSAMVHGGTFSSDPHLYPLINYRFNSAPTMPSYPTWNTTTTSSNAITTPSSGRFYGSSYNSHSQPINGSPLAFWRIPNSTIQSSSTNSTNPNTSFHHDRSLLQHHHHHHHLPLLAGDEINTARAVGPSGSQNPFAYDSKRGVHDHVSLDLHL* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2321 279 MobiDBLite consensus disorder prediction 43 88 - -
Lja5g2321 279 Pfam C2H2-type zinc finger 92 117 - -
Lja5g2321 279 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Lja5g2321 279 MobiDBLite consensus disorder prediction 47 88 - -
Lja5g2321 279 SUPERFAMILY beta-beta-alpha zinc fingers 90 121 IPR036236 -
Lja5g2321 279 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
Lja5g2321 279 PANTHER ZINC FINGER PROTEIN GIS 1 279 IPR044291 GO:0003700|GO:0009739|GO:0010026|GO:0010090
Lja5g2321 279 PANTHER ZINC FINGER PROTEIN GIS 1 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2321 Lja-Chr5 42181346 42182583 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2321 1 279 C2H2 Transcription Factor Family AT3G58070 39.860 8.95e-40 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2321 - - vun:114190818 264.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2321 5 42181346 42182583 Lja5g2321 5 42181346 42182583 ECH