Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2319 ATGTCTAAAATGGAGGCCAACATTAATAGTACAGTCACAAAATCTAGGGTTGCGTTGGATGGAAAGATTGGCATTAATTCGAAGAATGATGTCTATGACTTACTTAAGTGCCCTGTTTGCACAAATTTGATGTATCCACCAATTCATCAGTGCCCTAATGGCCATACATTATGTTCAAATTGTAAGATTTCTATGCATAACTGTTGCCCAACATGCTTCTGTGATCTTGGGAATATAAGGTGTTTGGCTCTAGAGAAAGTAGCTGAATCGTTGGAGCTTCCTTGCAGAAATCAGAGTCTAGGTTGTCATGATGTATTCCCATACTACACTATGCTTAAGCATGAGCAAAATTGTCGGTTTCGTCCGTACAAGTGTCCCTATGCTGGATCAGAGTGCTCTGTCATGGGTGACATTCCAACTCTCTTGGTCCATCTCAAGATTGATCACAAGGTTGACGTGCATGATGGATGCACCTTTAACCATCGATATGTCAAATCAAATCCACATGAAGTTGAAAACGCCATATGGATGCTAACTGTTTTTAATTGTTTTGAAAGGTATTTCTGCTTGCACTTTGAGGCATTTTTGCTAGGAAAAGCTCCAGTTTATATAGCCTTTTTACGATTTTTGGGTGAAGACAATGAGGCAAGTAAATTTAGGTTCACTTTGGAAGTTGGTGCAAATAGCCGTAAACTTATATGGCAAGGAATTCCAAGGAGCATTCGCAATAGTCATAGAAAGGTTCGTGATTGTCAAGATGGACTCATCATTCCGAGGCACTTAGCTCTTTATTTTTCTAGTGGGGACAAGCAACAATTGAAGTTCAAGATCACTGGTCATATTTGGAAAGACGAATGA 858 0.3951 MSKMEANINSTVTKSRVALDGKIGINSKNDVYDLLKCPVCTNLMYPPIHQCPNGHTLCSNCKISMHNCCPTCFCDLGNIRCLALEKVAESLELPCRNQSLGCHDVFPYYTMLKHEQNCRFRPYKCPYAGSECSVMGDIPTLLVHLKIDHKVDVHDGCTFNHRYVKSNPHEVENAIWMLTVFNCFERYFCLHFEAFLLGKAPVYIAFLRFLGEDNEASKFRFTLEVGANSRKLIWQGIPRSIRNSHRKVRDCQDGLIIPRHLALYFSSGDKQQLKFKITGHIWKDE* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2319 285 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 285 - -
Lja5g2319 285 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT1-RELATED 1 285 - -
Lja5g2319 285 ProSiteProfiles Zinc finger RING-type profile. 37 72 IPR001841 -
Lja5g2319 285 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 147 278 IPR008974 GO:0005515
Lja5g2319 285 Pfam Seven in absentia protein family 79 278 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lja5g2319 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 145 IPR013083 -
Lja5g2319 285 SUPERFAMILY TRAF domain-like 90 279 - -
Lja5g2319 285 CDD RING-HC_SIAHs 35 72 - -
Lja5g2319 285 ProSiteProfiles Zinc finger SIAH-type profile. 90 150 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2319 Lja-Chr5 42081489 42083127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2319 1 285 C3H Transcription Factor Family AT2G41980 74.825 1.70e-164 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2319 K04506 - gmx:100500061 491.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2319 5 42081489 42083127 Lja5g2319 5 42081489 42083127 ECH