Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2316 ATGGAACTTGCTCTGAGCTTAGGAGACACACCAAAACCTTTCACTTCACCAGATCCACCGGTTCAACTCAACCTTCTCCCTTTCACTCCGGTTCAAAGATCCCAACCATCTTCTTACCTTCAAATCCCCTGGCTCAACCAACCATCAGGCGGACCGGCGAGGTCGGTGGACGTGAACCGCTTTCCGGCGACGGTTACCGCGGCGGATGACGGCGACGACGGCGGCACCTCACTGTCGTCCCCGAACAGCGCGGTGTCGCCGTTTCAGGTGGATTTCAGCTTCAGAAATGGTAATGCAGAGTATGGAGGGAGGAACGAGGGTGAGGCTGAGCGAGCGAGTGACGACGACGAGAACGGGTCAACTCGGAAGAAACTCAGACTCTCTAAGGAGCAATCGGCGTTTCTTGAAGAGAGCTTCAAAGAACAAACCACTCTCACCCCTAAGCAGAAGCTTGAACTGGCAAAACAGTTAAATCTTCGTCCTCGTCAGGTGGAAGTTTGGTTTCAGAACAGAAGAGCTAGGACAAAGTTGAAGCAGACAGAGGTGGATTGTGAGTATTTGAAGAGATGCTGTGAGACTCTAACAGAGGAAAATAGGAGGTTGCAGAAAGAGCTTCAAGAACTGAGAGCATTGAAAACTTCTCAGCCATTCTACATGCAGCTTCCAGCTACAACTCTCACCATGTGTCCCTCATGTGAACGGGTGGCTACCAATTCCTGTGCCGGTACGGCCACCACCACCAACCAAATCCCAGTGGAGTTGTCTCTTGGAAAGCCCAGAATATTGCCCTTTCCTAATGGTCAAGCCCAAACACAGCAGGCCCAGACCCAGGTCCATAACACGGCTTCATGA 852 0.5176 MELALSLGDTPKPFTSPDPPVQLNLLPFTPVQRSQPSSYLQIPWLNQPSGGPARSVDVNRFPATVTAADDGDDGGTSLSSPNSAVSPFQVDFSFRNGNAEYGGRNEGEAERASDDDENGSTRKKLRLSKEQSAFLEESFKEQTTLTPKQKLELAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNSCAGTATTTNQIPVELSLGKPRILPFPNGQAQTQQAQTQVHNTAS* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2316 283 PANTHER - 15 250 - -
Lja5g2316 283 MobiDBLite consensus disorder prediction 96 127 - -
Lja5g2316 283 MobiDBLite consensus disorder prediction 1 20 - -
Lja5g2316 283 MobiDBLite consensus disorder prediction 65 84 - -
Lja5g2316 283 Gene3D - 114 183 - -
Lja5g2316 283 CDD homeodomain 122 179 IPR001356 GO:0003677
Lja5g2316 283 ProSiteProfiles 'Homeobox' domain profile. 118 178 IPR001356 GO:0003677
Lja5g2316 283 MobiDBLite consensus disorder prediction 265 283 - -
Lja5g2316 283 SUPERFAMILY Homeodomain-like 115 179 IPR009057 -
Lja5g2316 283 Pfam Homeodomain 122 176 IPR001356 GO:0003677
Lja5g2316 283 Pfam Homeobox associated leucine zipper 178 212 IPR003106 GO:0006355|GO:0043565
Lja5g2316 283 Coils Coil 184 214 - -
Lja5g2316 283 MobiDBLite consensus disorder prediction 264 283 - -
Lja5g2316 283 CDD bZIP 171 210 - -
Lja5g2316 283 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 15 250 - -
Lja5g2316 283 SMART halz 178 221 IPR003106 GO:0006355|GO:0043565
Lja5g2316 283 MobiDBLite consensus disorder prediction 104 127 - -
Lja5g2316 283 ProSitePatterns 'Homeobox' domain signature. 153 176 IPR017970 GO:0000981|GO:0006355
Lja5g2316 283 SMART HOX_1 120 182 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2316 Lja-Chr5 42025224 42027009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2316 14 234 Homeobox Transcription Factor Family AT3G60390 52.124 5.48e-72 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja5g2316 Homeodomain 9.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2316 K09338 - gmx:100776113 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2316 5 42025224 42027009 Lja5g2316 5 42025224 42027009 ECH
Lja1g1208 1 12420043 12422523 Lja5g2316 5 42025224 42027009 PCT