Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2314 ATGGACAACGACGACGGGGCCATCCGATGGCTAGATTTCGAAAAGATGAAAGTGATTTCCGCCGTGGGACGTGGCGCTAAAGGCGTGGTGTTTCTGGCGACAACCGGTGATGAGCGGTCATCATGGAGCGAGTGTGTTGCTCTGAAAGTGATATCGAAAGCTCTCATACATGAGAAGAAGGCGAGGAACTACGACAATACAGGCTCCGATGAGTACAAGAGGGTGTCGTTTGAGCAGGAAGTGCTACGTCGTTTTGATCACCCTCTTTTGCCACGGTTGCGAGGGGTTTTCGAAACAGAGAAGGTCGTCGGGTTTGCCATTGATTACTGCCATGGTGGCAGCCTCCATTCTCTCAGGAAGAAACAGACTGAGAAAATGTTCTCCGATGACACCATCAGGTTTTATGCTGCGGAATTGGTTCTCGCATTGGAGTATTTGCACGATCTGGGAATAGTGTACAGGGATTTGAAGCCGGAGAACGTGATGATCCAAGAAAATGGTCACATAATGCTCGTTGATTTTGATCTCTCCACGAAACTAAACCCTAAATCCCCTCAATCACTTAGTCTCGACTCGTCAGCAGGTTCCAACTCAGTGACGGTGAGGAGGCGGCGACTCTCACGTTTATACAGTTACTGCAACGCGGGGATCTCGCCGTGCGACACAGAGTGGGAACCCCAACCACGGCGGAACGAGTCGGACTCGGTGGAGAAATCAAACTCGTTCGTCGGAACGGAAGATTACGTGGCACCAGAGATCGTGTCCGGAAAGGGTCACGGTTTCGGAGTTGATTGGTGGTCACTCGGTGTCGTTTTGTATGAGATGCTCTACGGAACGACGCCGTTTAGAGGGGAGAATCGGAAGGAAACGTTTTACCGGGTTTTGACTAAAGAGCCAGAGCTCACGGGGGAGAAAACCGCGTTACGGGATTTGATTCGGAAACTGCTGGAAAAGGATCCTGACCGTCGGATCTGTGTGGATGAAATCAAGGGCCATGATTTCTTTAGAGGAGTTCAGTGGGACACGGTGCTGCAAATTGTGAGACCACCTTATATTCCTGAAAATGAGGTGGATAACACAGAGCGGTTTAGCAAAAACGAAGTGGAGATTTTTGTCCATGAGGTGTTTTTTCCTGACTGTGATGATGATGGAATGAAAAATAACAAAGTGGAGGAAAAGAATGGTAATGGTGAGAGCAATAAAACGGTGTGGATTCATAAGTTGAGTGATCACTCTCCCACTGAAAATGAGGATTTTTTAATTTTTTGA 1269 0.4831 MDNDDGAIRWLDFEKMKVISAVGRGAKGVVFLATTGDERSSWSECVALKVISKALIHEKKARNYDNTGSDEYKRVSFEQEVLRRFDHPLLPRLRGVFETEKVVGFAIDYCHGGSLHSLRKKQTEKMFSDDTIRFYAAELVLALEYLHDLGIVYRDLKPENVMIQENGHIMLVDFDLSTKLNPKSPQSLSLDSSAGSNSVTVRRRRLSRLYSYCNAGISPCDTEWEPQPRRNESDSVEKSNSFVGTEDYVAPEIVSGKGHGFGVDWWSLGVVLYEMLYGTTPFRGENRKETFYRVLTKEPELTGEKTALRDLIRKLLEKDPDRRICVDEIKGHDFFRGVQWDTVLQIVRPPYIPENEVDNTERFSKNEVEIFVHEVFFPDCDDDGMKNNKVEEKNGNGESNKTVWIHKLSDHSPTENEDFLIF* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2314 422 Gene3D Transferase(Phosphotransferase) domain 1 114 183 - -
Lja5g2314 422 PANTHER FLIPPASE KINASE 1-RELATED 8 396 - -
Lja5g2314 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Lja5g2314 422 Pfam Protein kinase domain 237 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2314 422 Pfam Protein kinase domain 18 185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2314 422 Gene3D Phosphorylase Kinase; domain 1 17 113 - -
Lja5g2314 422 ProSiteProfiles Protein kinase domain profile. 16 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2314 422 Gene3D Transferase(Phosphotransferase) domain 1 235 354 - -
Lja5g2314 422 ProSiteProfiles AGC-kinase C-terminal domain profile. 336 422 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lja5g2314 422 PANTHER SERINE/THREONINE-KINASE OXI1-LIKE PROTEIN 8 396 - -
Lja5g2314 422 Gene3D Phosphorylase Kinase; domain 1 355 365 - -
Lja5g2314 422 SUPERFAMILY Protein kinase-like (PK-like) 17 360 IPR011009 -
Lja5g2314 422 SMART serkin_6 16 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2314 Lja-Chr5 41908108 41910592 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2314 1 422 AGC Kinase Gene Family AT3G25250 55.402 7.76e-155 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lja5g2314 Pkinase 7.2e-33 CL0016