Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2311 ATGCACTTGTCTTGGCTAATCCGATATCAGTTATTAGCACTAATCTTCATTTTCATCACCCTCACCCAAGTTACCTCCTTATATTTCAACTTCCCTACCTTCAAACCAGAGGATGAAACTTCCCATTTACTCCTGAGCAAGAACTCAAAAATCTACCTAGATGCCATCCAAATAACCCCTGATATTCGCGGCGCGATCGTGGATTATTCCGGACGCGCTTTCTACAAAAAGCCATTCAGACTTTGGAGCAAGAACAACAACAACAAAGTAGCTGCCTTCAACACCACTTTTGTTCTCAACATAACCCCCCAAACCTCCCCTGGTGGAGAAGGCATAGCCTTCATCTTAACCGCGGATCGCACTCTACCGCAAAACAGTGAAGGACAATGGCTTGGTATTGTGAATTCCACAACCAATGGAACTTCACAATCTGCAATTCTCGCGGTGGAGTTTGACACCAGAAAAAGTTCCACAGATGATGGCCCTGACAACCATGTTGGGATCAACATAAACAGCATACATTCCATCATACAGGTTCCACTCATAAACACTAGGGTCAATATTTCATCTGGTATAAATGTAACTATCAGAATTCAGTATGAAAATGATGTAATAACCGTTTTTGGTTCCATGACTGGAGCTTCAAACGGTTCCATGGAGACCCTCTTGGTATCTCCACCTCTTAATCTATCTTCCTATCTTCAAGAAGAGGTTTACTTGGGTTTCTCTGCTTCAACAAGTAATTACACACAGTTGAACTGTGTAAGAGCATGGGAATTCAACGGTGTAGATATTGCAGACGGTGATAAAAACCTGGTTTGGGTTTGGATCACAGTACCAATTATTACAGTGATTGTCATAGGTGGATTGATCTTGTTCTTGGTTTTTCGCCAAAGGAAACGCCGCGCGGAGAATCCAGAAGATGCATATCCAAGAATAGAGGATCAAATTCAACATTCCTCATTTTCTCCAAAGAAGTTTCAGCTGAAGGAGATGAAAAAAGCAACAGGTGGATTCAGCCCTCAAAATAAACTTGGGGAAGGTGGATTTGGAACTGTCTACAAGGGGGTATTAGGAAACAATATGGAGGTAGCAGTGAAGAGAGTGTCCGAAAACTCGCGGCAAGGGAAGCAAGAATTCATAGCAGAAGTGACAACAATTGGAAGACTTCACCACAGAAACTTGGTGAAACTCATTGGCTGGTGCTACGAGAGCAAAGAGCTTCTACTAGTCTATGAGTTCATGCCTAATGGGAGCTTGGACAAGTACCTATTTGGCGATCAAAAACTCGGTAATAACAGCATCGGATGGGGACTTTCTTCAACACTGAATTGGGAAACTCGACATGGTGTGATTCATGGTGTGGCACAAGCACTGGACTATCTCCACAACGGTTGCGAAAAGCGGGTGCTTCATAGAGATATCAAGGCAAGCAACATCATGTTGGACACCGATTACAACGCGAAATTGGGGGATTTTGGACTAGCGCGTACAATTCAAAAGAGAAATGAGACTCACCACTCCACCAAGGAAATTGCGGGGACACCGGGTTACATGGCGCCGGAGACTTTTCTCACGGGGAGGGCGACCGTAGAGACCGATGTTTACGCGTTTGGGGTTCTTGTGTTGGAGGTAGTTTGTGGAAAGAGGCCAGGGAGTATGTTTGCACAAGATGACTATAAAAACAGCATTGTGTATTGGGTTTGGGAGCTTTATGGAAAGGGGAGAATAGTTAGTGCTGTTGATTCAAGGGTAAGTAAGGAGGAGGAGGAGGTGATCAAGGAGGAGGAAGTGGAGGATTTGCTTGTTCTTGGGCTGGCTTGTTGTCATCCGAACCCACACCGGCGGCCGTCGATGAGAACTGTTCTGCAGGTTCTTAACGGGGAAGCGCCGCCGCCGGAGGTGCCGCAGGATAGACCTGCTTTTATGTGGCCCGCTATGCCTCCATCTTTCAAAGAAAATGAAGATAGCTCCCTCATACAAGGATCACTTACAGCATTCACTGATATCTCTGGGAGATAA 2022 0.451 MHLSWLIRYQLLALIFIFITLTQVTSLYFNFPTFKPEDETSHLLLSKNSKIYLDAIQITPDIRGAIVDYSGRAFYKKPFRLWSKNNNNKVAAFNTTFVLNITPQTSPGGEGIAFILTADRTLPQNSEGQWLGIVNSTTNGTSQSAILAVEFDTRKSSTDDGPDNHVGININSIHSIIQVPLINTRVNISSGINVTIRIQYENDVITVFGSMTGASNGSMETLLVSPPLNLSSYLQEEVYLGFSASTSNYTQLNCVRAWEFNGVDIADGDKNLVWVWITVPIITVIVIGGLILFLVFRQRKRRAENPEDAYPRIEDQIQHSSFSPKKFQLKEMKKATGGFSPQNKLGEGGFGTVYKGVLGNNMEVAVKRVSENSRQGKQEFIAEVTTIGRLHHRNLVKLIGWCYESKELLLVYEFMPNGSLDKYLFGDQKLGNNSIGWGLSSTLNWETRHGVIHGVAQALDYLHNGCEKRVLHRDIKASNIMLDTDYNAKLGDFGLARTIQKRNETHHSTKEIAGTPGYMAPETFLTGRATVETDVYAFGVLVLEVVCGKRPGSMFAQDDYKNSIVYWVWELYGKGRIVSAVDSRVSKEEEEVIKEEEVEDLLVLGLACCHPNPHRRPSMRTVLQVLNGEAPPPEVPQDRPAFMWPAMPPSFKENEDSSLIQGSLTAFTDISGR* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2311 673 Pfam Protein kinase domain 342 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2311 673 Gene3D Phosphorylase Kinase; domain 1 313 414 - -
Lja5g2311 673 PANTHER - 11 661 - -
Lja5g2311 673 ProSiteProfiles Protein kinase domain profile. 339 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2311 673 CDD STKc_IRAK 345 628 - -
Lja5g2311 673 Gene3D - 25 270 - -
Lja5g2311 673 Gene3D Transferase(Phosphotransferase) domain 1 415 631 - -
Lja5g2311 673 SMART serkin_6 339 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2311 673 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 263 IPR013320 -
Lja5g2311 673 ProSitePatterns Protein kinases ATP-binding region signature. 345 367 IPR017441 GO:0005524
Lja5g2311 673 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 11 661 - -
Lja5g2311 673 CDD lectin_legume_LecRK_Arcelin_ConA 27 261 IPR001220 GO:0030246
Lja5g2311 673 Pfam Legume lectin domain 27 266 IPR001220 GO:0030246
Lja5g2311 673 SUPERFAMILY Protein kinase-like (PK-like) 320 626 IPR011009 -
Lja5g2311 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2311 Lja-Chr5 41741495 41743855 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2311 67 635 Receptor kinase-like Gene Family AT2G37710 38.280 8.74e-123 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Lja5g2311 Pkinase 1.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2311 - - gmx:100785031 1051.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2311 5 41741495 41743855 Lja5g2311 5 41741495 41743855 ECH