Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2306 ATGTTTTCGTGGTTGGCAAGGGCATTTTCTGCGTGCTTGAGACCTGTAAGGCAATATGCACGCATGAGCAAGGATGATAATGATGATGGTTCCGATAGTCCATCAACGGTGGATGACGCGCTTGTTTGGTTCAGGGACCTTGAGAAGCACTCGGGTGGTGAATTCTCCTTCGCGGTGGTTCAGGCTAACGAAGTTCTTGAAGATCATAGCCAGGTTGAGACTGGTTCTGATGGTGTCTTTGTCGGTGTCTACGATGGCCATGGCGGTCCTGAAGCTTCTCGGTTCATAAATGATCACCTTTTTCGTCATCTCATGAGGATTGCTCAAGAAAAAGGTTCTATGTCTGAGGATATTATAAAGAATGCTGTTTCTGCTACTGAGGATGGGTTTCTTACTCTTGTCCGGAGGAGTTATGGAATAAAGCCATTGATAGCAGCAATGGGTTCTTGTTGTCTGTTTGGTGTTATCTGGAAAGGGACACTGTATGTTGCCAATCTCGGCGACTCTCGTGCTGTGATCGGTTCCGTCCGTCGATCTAACAAGATTATTGCTGAACAGTTGAACAGAGAGCACAATGCTAGCAAAGAGGAGGTTAGACGAGAACTCAGGGCCCTGCATCCAGAAGATTCAGAAATAGTGGTTATGAAGCAGGGAACATGGCGCATTAAAGGCATCATCCAGGTATCCAGATCTATAGGGGATGCATATTTGAAGCGGCCTGAGTTCTCTTTCGATCCTTCTTTCCCACGGTTTCACCTTCCCGATCCTATCCGCCGACCAGTGCTAACTGCAGAACCATCTATATGTTCAAGAGTTTTACAACCTAATGATAAATTCATTATATTTGCATCTGACGGGCTTTGGGATCACTTGACGAATCAAGAAGCCGCCGAAATTGTTCATAACAACCCGCGAACTGGAATTGCAAGAAGACTTCTTAAGGCGGCTTTGAATGAAGCAGCTAGGAAAGGGAAGAGGACATATAAAGAGCTTCAGAAGGTTAAAAAGGGGATGAGGCGTTGTTTCCATGATGATATCACAGTAATTGTTGTCTTCATTGACCATGAGTTACTTGGGAAGAGGAATGTTCCAGTTCCTCAGGTTTCCATCAAAGGTTTTATTGACACGGTTGGACCATCACAGTTTAGAAGTTTCCAGGAAATGGAATGA 1170 0.4504 MFSWLARAFSACLRPVRQYARMSKDDNDDGSDSPSTVDDALVWFRDLEKHSGGEFSFAVVQANEVLEDHSQVETGSDGVFVGVYDGHGGPEASRFINDHLFRHLMRIAQEKGSMSEDIIKNAVSATEDGFLTLVRRSYGIKPLIAAMGSCCLFGVIWKGTLYVANLGDSRAVIGSVRRSNKIIAEQLNREHNASKEEVRRELRALHPEDSEIVVMKQGTWRIKGIIQVSRSIGDAYLKRPEFSFDPSFPRFHLPDPIRRPVLTAEPSICSRVLQPNDKFIIFASDGLWDHLTNQEAAEIVHNNPRTGIARRLLKAALNEAARKGKRTYKELQKVKKGMRRCFHDDITVIVVFIDHELLGKRNVPVPQVSIKGFIDTVGPSQFRSFQEME* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2306 389 Coils Coil 184 204 - -
Lja5g2306 389 Gene3D - 43 362 IPR036457 -
Lja5g2306 389 SMART PP2C_4 48 351 IPR001932 -
Lja5g2306 389 ProSiteProfiles PPM-type phosphatase domain profile. 54 353 IPR001932 -
Lja5g2306 389 SUPERFAMILY PP2C-like 61 354 IPR036457 -
Lja5g2306 389 Pfam Protein phosphatase 2C 71 321 IPR001932 -
Lja5g2306 389 ProSitePatterns PPM-type phosphatase domain signature. 80 88 IPR000222 GO:0043169
Lja5g2306 389 PANTHER ALPHABET, ISOFORM E-RELATED 7 374 - -
Lja5g2306 389 PANTHER PROTEIN PHOSPHATASE 2C 68-RELATED 7 374 - -
Lja5g2306 389 CDD PP2Cc 55 353 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2306 Lja-Chr5 41464614 41468595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2306 1 385 PP2C-type Phosphatase Gene Family AT5G06750 65.217 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2306 K01102 - gmx:100778238 657.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2306 5 41464614 41468595 Lja5g2306 5 41464614 41468595 ECH