Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2300 ATGGCGTCCAAAGGTCCCAGGTTCAAGTTTGATCATGAAACCAAAGCTAAACGGCAAAAGACTCTTGAAGCTCCAAAGGAGCCTCGGCGACCCAAAACTCATTGGGACCATGTCTTAGAAGAGATGGTGTGGTTATCAAAGGACTTTGAGTCAGAGAGGAAATGGAAATTAGCTCACGCAAAGAAAGTTGCTTTAAAAGCCAGCAAGGGCTTCTTAGATCAGGCTACAAGAGGTGAAAAGAAGATGAAGGAAGAAGAGCAGCGGTTAAGAAAAGTTGCACTAAATATTTCCAAGGATGTTAAGAAATTCTGGACAAAAATAGAAAAGCTGGTTCTTTACAAGCATCAGATGGTGCTTGATGAGAAGAAGAAAAAAGCACTTGACAAGCAGCTTGAGTTTCTTTTAGGGCAAACTGAGAGATACTCAACAATGTTGGCTGAAAATCTCGTGGATTCAACCTCTGCCGATAAACCAGCAGAGAAAAATTCTGCAGAGCATCACATAGACTATCAATCAGATGCACCTGATCACGATGAAGAATATGGTGTACAATCTGATGATGAATCGGAGGATGATGAGCAAACCCTTGAGGAAGATGAGGCACTTATAACTAAAGAAGAAAGACAAGAGGAATTGACAGCTTTGCATGATGAGATGAATCTTCCGATTGAGGAGTTACTAAAACGTTATGCTGGAGAAAAAGGAGAATTGGAAAGACCACAAATTAGTCAAGAGCATAGTGAAGATGGCGCAAAAATAGCTAGAACTGGTGATGCAGATGAAAATGGGGATCTTTCACCTGTCAGCAAAATTGGTACAAACGACTCCAGCGTGGTCCCGGGTCGACGTTGTGATGAAAGTAATGGTGATATAGCTACATCAACAAACAATCTATCTGAATACAAGGATCGTCAATCTGAAAATCTAAAAGAGCCCAGTGATACGGCCAATGAAAATTTTGCATATGATTTTACTGATGAAGAGGAAGATGGTGACTTTTTGTTTGGCACAGAAGATAAGGATGATGAAACAACTTTATCCGAGGAGGAAAAACTGGAATGTGTCGATGCAATCGATCCCAAGGACGAGATTGCATTATTACAAAAGGAGAGTGACATGCCTGTTGAGGAGCTGCTTGCAAGGTATAAAAAGGAGCAAGGTGATGATAGGGAAAGTGAATCTGATTATGCTTCTGCTCTATCAGAAGACCATTGTGATTCTTCAGTCCAGGAAGATTCTGGACAGAAAGTTCCTGCTATTTCTGTGGATGAAGAAGTCAAGTCTGGTGAGCACCTGGCTTCTGTACAGTCCCAGGCAGAAGAACAATGGGAAGAGCCTTGTGAAAATTCAGAGAAAAAGGAAAGTGAGGATATAATTGCTGATGCAGCTGCAGCTGCAAGATCTGCACAACCAACTGGAAACACCTTCTCGACAACTAAAGTGCGTACAAAGTTCCCTTTTCTACTAAAGTACTCTCTTCGTGAATATCAGCATATTGGATTGGATTGGCTTGTCACGATGTATGAAAAAAAGCTGAACGGAATTTTGGCAGATGAAATGGGGCTTGGAAAGACAATTATGACGATAGCTTTGCTCGCACATCTTGCCTGTGAAAAGGGTATTTGGGGCCCACATCTAATTGTGGTACCAACTAGTGTAATGCTTAACTGGGAGACTGAATTTCTGAAATGGTGTCCTGCTTTTAAAATCTTAACTTATTTTGGAAGTGCAAAGGAGAGAAAACATAAAAGACAGGGATGGTTAAAACCAAACTCCTTCCATGTTTGCATAACTACTTATAGATTGGTTATTCAGGATGCCAAAGTTTTCAAGCGAAAAAAGTGGAAATACTTGATCTTGGATGAAGCTCATCTCATTAAAAACTGGAAGTCACAAAGGTGGCAGACACTCTTGAATTTCAATTCAAAACGGCGGATTCTCTTGACTGGTACACCACTACAGAATGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTGATGCCTCATGTTTTCCAATCACACCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGGATGGTAGAGGGAGAGGAAAAAGTTAATAAGGAGGTTGTTGATCGCCTGCACAATGTCCTTCGTCCATTCTTACTCCGTCGGTTAAAGCGAGATGTGGAAAAGCAACTTCCAATGAAACGTGAGCATGTTATATACTGTAGACTGTCAAAGAGGCAACGGAATTTGTATGAAGATTTCATTGCTAGTTCAGAGACCCAAGCCACTCTTGCAAGTGCCAATTTCTTTGGGATGATTAGTATTATCATGCAACTACGTAAGGTTTGCAATCATCCTGACCTATTTGAGGGTCGTCCTATTATCAGTTCTTTTGACATGTCTGGTATTCATATTCAGTTAAGTTCTTCTGTTTGCTCCATGCTTTCGCCTAGCTCTTTTTCAACAGTTGACCTAGAAGGGTTAGGTCTTTTATTTACTCATCTTGACCATCGCATGACTTCTTGGGAAAGTGATGAAGTGCAAGCTATTGAAACCCCTGCAACTTTAATCACTGAACGCTCTGATATGGCTGATCTAGAAGTAATTAGTCCCGGACTGAAACGTCACAAAAAGCTGCAAGGAACAAACATTTTTGAAGAGATACAAAGGGCAATTTGGGAAGAGAGGCTGAGACAGGCAAAGGACCGAGCAGCAGCTATTGCATGGTGGAACTCATTGAGGTGTAAAAAGCGAGCCATCTACTCAACGACTCTAAGGGACCTTGTAACCATAAGGCATCCTGTTCATGATATTCATCAAATGAAGGCAAACCCTGTTTCATACCTGTACTCATCAAAGCTGGCTGACATTGTTCTCTCCCCAGTTGAACGATTTCAAAGGATGACTGATGTGGTTGAAAGTTTCATGTTTGCTATTCCTGCCACTCGGGCACCTTCTCCTGTTTGCTGGTGCAGTAAAAATGAGACAACCGTTTTACTGCACCCATCTTTCAAGCAGCAATGTTCTGATGTTCTGTCACCCCTACTGTCGCCAATCAGGCCTGCTATTGTCCGTCGGCAATTGTATTTTCCAGATAGGCGTCTTATACAATTTGACTGCGGGAAACTCCAGGAACTAGCAATTTTGTTGAGGAAATTAAAATCAGAAGGTCACCGAGCCCTGATATTCACTCAGATGACTAAGATGCTTGATATCTTAGAGGCGTTCATTAATTTGTATGGTTATACTTACATGCGCTTAGATGGATCAACCCCACCGGAGGAGAGGCAGACTTTAATGCAGCGTTTTAATACAAACCCCAAATATTTTCTTTTCATCTTGTCAACTCGTAGTGGGGGTGTTGGTATTAATCTAGTTGGAGCGGACACAGTTATTTTTTATGATAGCGACTGGAATCCTGCTATGGATCAACAGGCTCAAGATCGGTGCCACAGAATCGGTCAGACACGTGAAGTTCATATCTATAGATTGATTAGTGAAAGCACTATTGAGGAGAATATTTTGAAGAAAGCAAATCAGAAGCGTGCACTTGATGATCTGGTTATACAAAGTGGGGGTTATAATACTGAGTTCTTCAAGAAGCTTGATCCTATGGAAATATTTTCAGGTCATAGAACACTTTCAATTAAAAACACGCCAAAGGAGAAAAACCAGAACAATGGAGAAGTTTCCGTAACTAATGCAGATGTAGAGGCTGCATTAAAATATGTTGAAGATGAAGCAGATTATATGGCATTGAAGAAAGTTGAACTGGAAGAAGCTGTGGACAACCAGGAATTTACAGAAGAAGCCATTGGGAGACTTGATGAGGATGAATATGTAAATGAAGATGATGAGCCTGCAGAGTTAGGTGAATCTGTTCCCAATTTGAATAAAGAAAATGCATTAGTATTAAAAGAAAGTGATCCTAAGGAAGATAGACCTCCCTCTGTTTCCGCCAAGGAAGATGATGTTGACATGCTCGCTGATGTGAAACAGATGGCTGCAGCTGCAGCTGCATGTGGACAAGCTATCTCAGCCTTTGAGAATGAGCTACGCCCTATTGATCGGTATGCCATTCGGTTTTTGGAACTGTGGGATCCAATTATAGATAAAACAGCCTTGGAATCTGAAGTCAGGATTGAGGACACTGACTGGGAGTTGGATCGCATTGAAAAGTATAAGGAGGAGATGGAAGCCGAAATTGATGAAGATGAGGAGCCTCTAGTGTATGAAAGCTGGGATGCTGATTTTGCAACTATGGCTTATCGACAGCAAGTAGAGGCCTTGGCTCAACATCAGTTAATGGAGGAACTTGAAAATGAAGCTAAACAGAAAGAGGAAGCGCTTGAAGAAAATTTTGATTCTAAAAAGATTCAAACACCAGGTGATTCAAAGTCCAAACCAAAAAAGAAACCAAAGAAAGCAAAGTTCAAATCTCTGAAGAAAGGATCTTTGACCTCTGGCTTGAGATCTGTGAAAGAAGAGACACAAGATTTAAGAAGAGACACTAGTCCGGATTTTGTGTCTCCAAATTCCGCTATGCAGAAAAAACGGAAAAAGTCTATATTGACAATTGATGGTGAAGAAGAAATCAGATTTAAGAAGTCCAAAAAATCCAAGAGGGATCTTCCTGACGTCTATTCTTCAGATTTAGAATCCAACTCATTAGTTGTGCTAGATGAACATGCAGAATCAAAGCCATGTGAAACTATGGTTGACTTGGATCAGAAAACAGCTAGCAGGTGTAAGGTTAGAGGAAAAATATCCATTGTTCCAATGCCTGGGAAATGGATCTTCACAATAAAACCTGAAAAATCAAAGAAGGGGTCCAAAGATTGTATTCCATCAGCTGATTTTTGGCTACCTCAGGAGGATGCAATATTATGTGCCATTGTTCATGAATATGGTACTAACTGGAGTTTGGTTAGTGAAACACTTTATGGAATGACTGCTGGCGGAGCATATAGGGGGCGATATCGTCATCCTATCCATTGCTGTGAGAGATTCAGAGAACTATTCCAAAAATATGTTGTGTTCTCGATGGACACTGCAAATCATGAGAAGATAAACAATGCTGGCTCTGGAAAGGGTCTTCTTAGAGTTACAGAGGGAAGCAGCAAGAGCATGTGA 5112 0.4094 MASKGPRFKFDHETKAKRQKTLEAPKEPRRPKTHWDHVLEEMVWLSKDFESERKWKLAHAKKVALKASKGFLDQATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMVLDEKKKKALDKQLEFLLGQTERYSTMLAENLVDSTSADKPAEKNSAEHHIDYQSDAPDHDEEYGVQSDDESEDDEQTLEEDEALITKEERQEELTALHDEMNLPIEELLKRYAGEKGELERPQISQEHSEDGAKIARTGDADENGDLSPVSKIGTNDSSVVPGRRCDESNGDIATSTNNLSEYKDRQSENLKEPSDTANENFAYDFTDEEEDGDFLFGTEDKDDETTLSEEEKLECVDAIDPKDEIALLQKESDMPVEELLARYKKEQGDDRESESDYASALSEDHCDSSVQEDSGQKVPAISVDEEVKSGEHLASVQSQAEEQWEEPCENSEKKESEDIIADAAAAARSAQPTGNTFSTTKVRTKFPFLLKYSLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKHKRQGWLKPNSFHVCITTYRLVIQDAKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKREHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIISSFDMSGIHIQLSSSVCSMLSPSSFSTVDLEGLGLLFTHLDHRMTSWESDEVQAIETPATLITERSDMADLEVISPGLKRHKKLQGTNIFEEIQRAIWEERLRQAKDRAAAIAWWNSLRCKKRAIYSTTLRDLVTIRHPVHDIHQMKANPVSYLYSSKLADIVLSPVERFQRMTDVVESFMFAIPATRAPSPVCWCSKNETTVLLHPSFKQQCSDVLSPLLSPIRPAIVRRQLYFPDRRLIQFDCGKLQELAILLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTPPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPMEIFSGHRTLSIKNTPKEKNQNNGEVSVTNADVEAALKYVEDEADYMALKKVELEEAVDNQEFTEEAIGRLDEDEYVNEDDEPAELGESVPNLNKENALVLKESDPKEDRPPSVSAKEDDVDMLADVKQMAAAAAACGQAISAFENELRPIDRYAIRFLELWDPIIDKTALESEVRIEDTDWELDRIEKYKEEMEAEIDEDEEPLVYESWDADFATMAYRQQVEALAQHQLMEELENEAKQKEEALEENFDSKKIQTPGDSKSKPKKKPKKAKFKSLKKGSLTSGLRSVKEETQDLRRDTSPDFVSPNSAMQKKRKKSILTIDGEEEIRFKKSKKSKRDLPDVYSSDLESNSLVVLDEHAESKPCETMVDLDQKTASRCKVRGKISIVPMPGKWIFTIKPEKSKKGSKDCIPSADFWLPQEDAILCAIVHEYGTNWSLVSETLYGMTAGGAYRGRYRHPIHCCERFRELFQKYVVFSMDTANHEKINNAGSGKGLLRVTEGSSKSM* 1704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2300 1703 Pfam Helicase conserved C-terminal domain 1037 1147 IPR001650 -
Lja5g2300 1703 MobiDBLite consensus disorder prediction 1296 1315 - -
Lja5g2300 1703 MobiDBLite consensus disorder prediction 378 416 - -
Lja5g2300 1703 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Lja5g2300 1703 SMART ultradead3 489 682 IPR014001 -
Lja5g2300 1703 MobiDBLite consensus disorder prediction 152 348 - -
Lja5g2300 1703 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 505 670 IPR014001 -
Lja5g2300 1703 Coils Coil 1374 1394 - -
Lja5g2300 1703 MobiDBLite consensus disorder prediction 288 302 - -
Lja5g2300 1703 CDD SF2_C_SNF 1023 1158 - -
Lja5g2300 1703 MobiDBLite consensus disorder prediction 321 348 - -
Lja5g2300 1703 MobiDBLite consensus disorder prediction 158 179 - -
Lja5g2300 1703 PANTHER HELICASE SRCAP 5 1536 - -
Lja5g2300 1703 MobiDBLite consensus disorder prediction 1 32 - -
Lja5g2300 1703 MobiDBLite consensus disorder prediction 180 200 - -
Lja5g2300 1703 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1038 1188 IPR001650 -
Lja5g2300 1703 Gene3D - 739 815 - -
Lja5g2300 1703 Pfam SNF2-related domain 510 782 IPR000330 GO:0005524|GO:0140658
Lja5g2300 1703 MobiDBLite consensus disorder prediction 201 259 - -
Lja5g2300 1703 MobiDBLite consensus disorder prediction 1435 1515 - -
Lja5g2300 1703 Gene3D - 999 1252 IPR027417 -
Lja5g2300 1703 MobiDBLite consensus disorder prediction 428 455 - -
Lja5g2300 1703 ProSiteProfiles Myb-like domain profile. 1614 1667 IPR001005 -
Lja5g2300 1703 MobiDBLite consensus disorder prediction 1435 1460 - -
Lja5g2300 1703 Gene3D - 1610 1671 - -
Lja5g2300 1703 MobiDBLite consensus disorder prediction 1497 1512 - -
Lja5g2300 1703 CDD DEXQc_SRCAP 493 715 - -
Lja5g2300 1703 SMART helicmild6 1064 1147 IPR001650 -
Lja5g2300 1703 Coils Coil 1422 1453 - -
Lja5g2300 1703 Pfam HSA domain 27 93 IPR014012 -
Lja5g2300 1703 MobiDBLite consensus disorder prediction 1269 1283 - -
Lja5g2300 1703 MobiDBLite consensus disorder prediction 378 410 - -
Lja5g2300 1703 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 473 715 IPR027417 -
Lja5g2300 1703 Gene3D - 461 738 IPR038718 -
Lja5g2300 1703 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 717 1209 IPR027417 -
Lja5g2300 1703 SMART bromneu2 23 94 IPR014012 -
Lja5g2300 1703 MobiDBLite consensus disorder prediction 1266 1291 - -
Lja5g2300 1703 MobiDBLite consensus disorder prediction 1297 1315 - -
Lja5g2300 1703 PANTHER HELICASE SRCAP-RELATED 5 1536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2300 Lja-Chr5 41293896 41324200 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2300 513 785 RAD5 or RAD16-like Gene Family AT5G43530 30.435 1.05e-28 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja5g2300 SNF2_N 1.6e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2300 - - aprc:113871102 2801.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2300 5 41293896 41324200 Lja5g2300 5 41293896 41324200 ECH