Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2294 ATGAACGAGAACAAGATTGATTTTGTGGGACGGATTCAACCAAGCCCTGGTGATTTCAATTCTGAGTTTGGCAATTATTTTTGCCAATATTTTGATGTGAGACAGGGTTTGAATATGGGGACTTGTGGTGGAGGAGTGGAACAACCACCATACATAGGCCAAGCTAGATCATCTAATAACACCATTATCAGTCATTTTGAGTCACCAGCTTCTGCGTTTTATGCAACAGAAATCTACATGGGTTTCCCTCAATATGATTGCCAAATTGGTAATGGTAATGGTAGTGGTAATCCCTCTTTGATAACTCAATCTAAGACTCATGATTTGGAATTCCCTTTGTATCAAAATCCCAAGGAAACCCTTTTCCTTGATTCACCAAACCAATCTGGCCCCAATTTTGAGTTGTCAAATCCTTTGCAATCTCAATTGAATAGTGATCAGTGTTGTGGATCTCCTGAAAATTCTAATAAAATCCCATGTGGGACTTTCCCTGGAGACAATTTTCTTCCAATTGAACAACACAAGTTGTTCATTGATGATGCTGTCTCAGTTTACAGGAGCCAATCCAATGTTTCTAAAGGAAACCAGGACAACAACATGGGTCCATATAATTTACCTCAAACACAGATCAAGTTCTCTTCTCATCCGCAAGACAAGTTGTCTCCAACACTCTCAGCAGGAAGTGTCTCAACTATAACTGGAAACCCTGCTTGTAGTGGACCTGCTGTTTCGAGCAAAACGCGTATAAGATGGACTCAGGATCTTCATGAGAAGTTTGTTGCATGTGTGAATAGCCTTGGAGGTGCTGAGAAGGCAACACCAAAAGCTATATTAAGGCTGATGGAATCAGATGGATTGACCATCTTCCATGTTAAGAGTCATTTGCAGAAATATAGGACTGCAAAATACATGCCAGAGGCAGCTCAAGGGAAATCTGACAACAAAAGAACCCATGTAGAGAATGTGCATCTTGATGTCAAAACTGGCTTGCAAATCAGAGAAGCACTTCAGCTGCAGCTAGATGTTCAGCGGCACCTTCATGAACAGCTAGAGATTCAGAGAAAATTACAAATGCGGATTGAAGAACAAGGTAAGCAACTGAAGATGATGTTTGACCAACAGCAGAAGACAAGTAATAGCATCTTGAACACTCGTAATTTGAGCAATACAGACAATAATGATAAACCAATAAGTCCTAAAGATGTTGAGGTTTCCATTTCTGAAGGGTCTGAGAAATCCTTCTTCCACTCCAAGATCAGTTAG 1263 0.4038 MNENKIDFVGRIQPSPGDFNSEFGNYFCQYFDVRQGLNMGTCGGGVEQPPYIGQARSSNNTIISHFESPASAFYATEIYMGFPQYDCQIGNGNGSGNPSLITQSKTHDLEFPLYQNPKETLFLDSPNQSGPNFELSNPLQSQLNSDQCCGSPENSNKIPCGTFPGDNFLPIEQHKLFIDDAVSVYRSQSNVSKGNQDNNMGPYNLPQTQIKFSSHPQDKLSPTLSAGSVSTITGNPACSGPAVSSKTRIRWTQDLHEKFVACVNSLGGAEKATPKAILRLMESDGLTIFHVKSHLQKYRTAKYMPEAAQGKSDNKRTHVENVHLDVKTGLQIREALQLQLDVQRHLHEQLEIQRKLQMRIEEQGKQLKMMFDQQQKTSNSILNTRNLSNTDNNDKPISPKDVEVSISEGSEKSFFHSKIS* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2294 420 Pfam MYB-CC type transfactor, LHEQLE motif 330 377 IPR025756 -
Lja5g2294 420 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 246 301 IPR006447 GO:0003677
Lja5g2294 420 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 43 420 - -
Lja5g2294 420 Coils Coil 333 353 - -
Lja5g2294 420 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 43 420 IPR044848 GO:0003700
Lja5g2294 420 MobiDBLite consensus disorder prediction 373 420 - -
Lja5g2294 420 Gene3D - 245 304 - -
Lja5g2294 420 Pfam Myb-like DNA-binding domain 250 299 IPR001005 -
Lja5g2294 420 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 245 303 IPR017930 -
Lja5g2294 420 MobiDBLite consensus disorder prediction 373 395 - -
Lja5g2294 420 SUPERFAMILY Homeodomain-like 244 300 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2294 Lja-Chr5 41004925 41008468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2294 246 395 G2-like Transcription Factor Family AT4G28610 57.237 2.17e-50 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lja5g2294 Myb_CC_LHEQLE 2.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2294 - - gmx:102668541 531.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2294 5 41004925 41008468 Lja5g2294 5 41004925 41008468 ECH