Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2292 ATGAGTTCTGGCGCCTCTGCCACCAAACCACAACCACCACCACCTCCATCACCACCACCAGCCACTGAGTCTTCCCTTGATGGCTTGCAATTTGGGCAAAAAATATACTTTGAGGATGCTGCGGAGGGTCTTGCTGCAGCTCAGGCTAAACCGAAGAAGGGAAGGGGTGGTGGTGCTGCGGCGGCTCAGCCACTTCGGTGCCAGGTTGAGGGTTGCAATGCAGATCTGCGTGATGCGAAGGCTTACTATTCCAGGCACAAGGTGTGTGACATGCACTCAAAATCCCCTTCTGTCATTGTCGCTGGTTTGGACCAAAGGTTTTGCCAACAATGTAGCAGATTTCATCAGCTTCCTGAATTTGATCAAGGAAAACGAAGTTGCCGCAGGAGACTCGCTAACCATAACGAGCGTAGGAGGAAGCCACCAACAGGCTCCTTGTTAACTTCACGTTATGCCAGACTTTCTTCACCTATTTTCGGTAACAATGGCAGAGGTGGTGGCTTTGTGAAGGACTTTGCTCCACATCCAAAGCTTACTCTGGGAAATGCATTACCATGTGAGCCAGTTCCTGGCATTCAAACCATAACACTTCCCTGGCAAGCCAACTCACAGGCACCCTCTGATTTTTTCCTGCAAGACTCAGTGGGTGGGACAAGTTTCTTTGGTCCAAGACACCTTCCAGTGGAAGGTTACAGTACTCAAGTCACAGATTCAAGCTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGGGTTCCAAAAACACTACACCTAGTGTTGAGCTAAACAACTTGCTGAATTTCAATGGGACACTCATGACACAACTTGCTACTGCATCTTCTCATCAAGTTGCAGGCATCCATCATCTTCCAAACTCGTCGTGGTACTTCAAGGGTGTTGATTCGGGTAATTGCTCACCGAACGAGTTTGTCCCTGATCTTGGTCTTGGTCCTGGGGAGCTTGATGTGGGGAAGTCCGGAGCCTGTGATTCTCCTCACTGGTCACTTTAA 1008 0.4921 MSSGASATKPQPPPPPSPPPATESSLDGLQFGQKIYFEDAAEGLAAAQAKPKKGRGGGAAAAQPLRCQVEGCNADLRDAKAYYSRHKVCDMHSKSPSVIVAGLDQRFCQQCSRFHQLPEFDQGKRSCRRRLANHNERRRKPPTGSLLTSRYARLSSPIFGNNGRGGGFVKDFAPHPKLTLGNALPCEPVPGIQTITLPWQANSQAPSDFFLQDSVGGTSFFGPRHLPVEGYSTQVTDSSCALSLLSNQTWGSKNTTPSVELNNLLNFNGTLMTQLATASSHQVAGIHHLPNSSWYFKGVDSGNCSPNEFVPDLGLGPGELDVGKSGACDSPHWSL* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2292 335 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 17 316 - -
Lja5g2292 335 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 316 IPR044817 GO:0003677
Lja5g2292 335 Pfam SBP domain 67 140 IPR004333 GO:0003677
Lja5g2292 335 SUPERFAMILY SBT domain 65 145 IPR036893 GO:0003677|GO:0005634
Lja5g2292 335 MobiDBLite consensus disorder prediction 1 28 - -
Lja5g2292 335 MobiDBLite consensus disorder prediction 8 22 - -
Lja5g2292 335 Gene3D - 58 128 IPR036893 GO:0003677|GO:0005634
Lja5g2292 335 ProSiteProfiles Zinc finger SBP-type profile. 64 141 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2292 Lja-Chr5 40957456 40962036 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2292 29 247 SBP-box Gene Family AT2G42200 48.276 7.95e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lja5g2292 SBP 2.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2292 - - gmx:100807165 396.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2292 5 40957456 40962036 Lja5g2292 5 40957456 40962036 ECH