Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2290 ATGACTGCTACTAGTAGTTCAGTTTCAAGAAAGGAGTTCAATCCCACAGATGATGAACTCCTTCAATTGTTCCTTTACAACAAGGTCCACGGTAAGCCTTTGCCTGACAATGCCAACATTCTTGAATATGACTTATACGGAGAAACGAACCCATGGGAGATTTGGGAAGAGTTTGGAGACTCCAACTCGTATGGTGGTAAGGACCTTTACTTCTTCACTAAACTGAAGAAGAAGCTCGGTGCTAGCGCGCGCTCAGTTCGCACCATAGGGTTGGGTTCATGGGAAAGTGAAGGTGCTGGTAAGATTGTAGTAGCTCATAACAAACTCCTTGGAATGAAGAAACGTTTTCGGTTTGAGAAGAGTGGCACTATTGAAGATGGTAAGTGGAACATGCATGAATACAGCCTTGACTCGTCTTTGCTCACCGATTCTTCAGCCGTAAATCATGTTCTATGTAGATTTAGAAAGAATTTTGGAAATAATACTCGTAAAAGAAGTACGAGCAAACAAAATATGACAGACACTACGAAAAGGAGGACATTGGCTCTAGAACTTGCAGCTACCACGGAATCTTTAGGAACATATGAGTTGGGTAGAAGGAGGTCCAATGATCGATTCCGCAGCAACCAAAATGTCATCAAGAGAGTAGAGACAACATGGAGGTATATAATTATGCTATTAAAATTCAATTTATAG 696 0.4124 MTATSSSVSRKEFNPTDDELLQLFLYNKVHGKPLPDNANILEYDLYGETNPWEIWEEFGDSNSYGGKDLYFFTKLKKKLGASARSVRTIGLGSWESEGAGKIVVAHNKLLGMKKRFRFEKSGTIEDGKWNMHEYSLDSSLLTDSSAVNHVLCRFRKNFGNNTRKRSTSKQNMTDTTKRRTLALELAATTESLGTYELGRRRSNDRFRSNQNVIKRVETTWRYIIMLLKFNL* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2290 231 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 12 196 - -
Lja5g2290 231 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Lja5g2290 231 Gene3D NAC domain 16 180 IPR036093 GO:0003677|GO:0006355
Lja5g2290 231 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 12 196 - -
Lja5g2290 231 Pfam No apical meristem (NAM) protein 12 136 IPR003441 GO:0003677|GO:0006355
Lja5g2290 231 SUPERFAMILY NAC domain 12 155 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2290 Lja-Chr5 40780578 40783733 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2290 13 192 NAC Transcription Factor Family AT1G77450 31.937 1.53e-18 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja5g2290 NAM 7.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2290 - - lja:Lj0g3v0151399.1 291.197