Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2289 ATGGCTCCTGCTAGTTTACTTTCAAGAAATGAGTTCAAGCCCACAGATGATGAACTCCTCCAATTGTTCCTCTACAACAAGGTTCTCGGTAAACCCTTGCCTGAAAACGCCACCATTCTTGAATGTGACTTGTACGGTGAGCAAAACCCATGGGAGATTTGGGAACAATTCGGAGACTCCAACTCATACGGTGGAAAGGACCTTTACTTCTTCACCACGCTAAAGAAGAAGACCGGTGCTCGCGCACGCTCGGTTCGCACCATTGGGTTGGGTACATGGGAATGTGAAGATGTTGGCAAGATCATACTGGCTCCTAATGACCGCCACAGCAAACCCCTCGGCATGAAGAAACGTTTTCGGTTTGAGAAGAGTGGCACTGAAGAAGATGGAAGATGGATCATGCATGAGTACAGTCTTGACTCGTCTTTGCTCCCTGATTCTTCAGCCAATAATCAGGTTCTATGTAGATTTAGAAAGAATTTGGCACGTAATATTAAACCTAAGAAGAGTCGGAAGGGAAGTACAAGCCAACAAGAGACTGAAGAGAGGAAGACGAGGGTTAATGACAAGAAAAGGAAGATCATGGTTCTTGAACATGGAGCTACCCCAGAATCTGAATCTAACATTATTAATAACAATAATGAAGTTTCATTGGAGAAAGATAGTTGCGAAGAACTAAGAGCCCATCCAGAGAATGGAGACAATATAAAGGACATTATTATTAATGATAATAAAGTTTGGTTGGAGAAGGATATTTGCCAAGTACCAAAAAGTCATCTTGAGAATGGAGGCAAGAATGAGGTGGTTGAAAATACCGAAGGAAATGAGTCTGAATTAGAGGAAGAAGATGAAGATGGAGATCCCACAATGACTTGGCCTGAATTGTTTGCACTGCAGTTGAGAACGGGACGCTGGGACCCATAG 924 0.4318 MAPASLLSRNEFKPTDDELLQLFLYNKVLGKPLPENATILECDLYGEQNPWEIWEQFGDSNSYGGKDLYFFTTLKKKTGARARSVRTIGLGTWECEDVGKIILAPNDRHSKPLGMKKRFRFEKSGTEEDGRWIMHEYSLDSSLLPDSSANNQVLCRFRKNLARNIKPKKSRKGSTSQQETEERKTRVNDKKRKIMVLEHGATPESESNIINNNNEVSLEKDSCEELRAHPENGDNIKDIIINDNKVWLEKDICQVPKSHLENGGKNEVVENTEGNESELEEEDEDGDPTMTWPELFALQLRTGRWDP* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2289 307 MobiDBLite consensus disorder prediction 259 291 - -
Lja5g2289 307 Pfam No apical meristem (NAM) protein 11 139 IPR003441 GO:0003677|GO:0006355
Lja5g2289 307 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 11 277 - -
Lja5g2289 307 SUPERFAMILY NAC domain 11 158 IPR036093 GO:0003677|GO:0006355
Lja5g2289 307 MobiDBLite consensus disorder prediction 172 187 - -
Lja5g2289 307 MobiDBLite consensus disorder prediction 273 289 - -
Lja5g2289 307 Gene3D NAC domain 15 164 IPR036093 GO:0003677|GO:0006355
Lja5g2289 307 MobiDBLite consensus disorder prediction 165 187 - -
Lja5g2289 307 ProSiteProfiles NAC domain profile. 6 160 IPR003441 GO:0003677|GO:0006355
Lja5g2289 307 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 11 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2289 Lja-Chr5 40771291 40773426 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2289 12 227 NAC Transcription Factor Family AT1G77450 29.911 7.09e-16 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja5g2289 NAM 2.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2289 - - aprc:113871407 247.284