Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2287 ATGGTTTCTAACTACGCTTATGCCAGTTTCATCTTCGTTGTTGTCTTCTTGGCAACTTCGATTTCTCGGATTTCTGCAGTTACTGATTCCCCAGACGTGACTGCTCTCCAGGACCTATACAGAACCTTGAACTACCCACTGGAGCTTCTTGGATGGAATGGTAGTGATCCTTGTGTGGAGTCTTGGACAGGAGTAGCATGTTCTGGGTCATCAGTTATACACCTCAAAATTCAAGGATTGAACCTCACTGGGTATCTTGGAGGCTTGCTTCACAATCTACAAAGCTTGAAGCATTTGGATGTCAGTTCTAACAACATAGTTGGTGAGATACCATATGGTTTGCCCCCCAATGCCACACATATAAACATGGCTTGCAACTATTTGAGCCAAAATATCCCTCATTCTTTACCAACCATGAAGAAACTGAGACATCTGAATTTGAGCCACAATTTCTTATATGGACCCATTGGCAATGTGTTCACTGGCTTAGATAATCTCAGGGAAATGGACCTTTCATACAATAAATTCACTGGAGATCTACCAAGTTCATTTGGTTCCTTGTCAAGTCTTGGTAGATTGTTCCTGCAGAATAACAGATTTTCTGGATCAGTCACCTACCTGGCTGAGCTTCCACTCATAGATTTGAACATTCAAGAAAATCTGTTTAGCGGCATTATTCCACAGCATTTTCAGACCATACCAAACTTATGGATTGGAGGGAATAAGTTCTATCCATTGGCCGACTCTCCTCCCTGGGCATTTCCAATGGACAGTGTACCAACTGAGCATAATACTAGTCTCCCACCCACAACTCAAGCAAATGCCATCGAGAACTTTGTTCCTCTCAAAGTAAGAAAACACAAGAAGAACCGTATGGGTCCTGGAGGAATAGCTTTTATGGTAGGTGGAGGAACATTATTGGTAACTGGATTCGCCCTCTTCATCGCAATCCGTTTGAATCAATTACAGAAACTGAGGAACTTTGAAAGCAACCATAGCTCATCGCCGCCTCATCCTGTCAGTGCAGCCAAAGAAGTCTCTTCTACTGCATTAAATGAGAGCCTGGAAATCCCACCTTTCAATGCTGCATCCCTTTTGCATCCAAGGCGTTTACCTTCCCAGAACCATAAAAGAATGGGGGAGGCTTCAAGAAGAAGTTTATCCGAAAGAGACAGAATCACCGGAAGGACAAAGATTTACACCGTAGCTGAGGTTCAGTTGGTTACAAACAGCTTCAGTGAAGACAACCTTTTGGGAGAGGGATCTCTTGGCCCCGTTTACAGAGCTGAATTTCCACATAACAAGATGTTTGCTGTGAAGAATGTCCACATGGCGGGCTTGTCTCTCAGTGAAGAGGAAAAGTTCTTAGATGTCGTTTGTGTTGCTTCCCGGCTGAAGCACCCAAACATAGTTTCACTGAAAGGTTACTGCTTGGAGCACGGACAGCATCTTCTTGTTTACGATTATGTCAGAAATTTAACTCTGGATGATGCTCTACACAGTGCAGCATACAAACCTTTATCTGGGGGTCTCCGACTGCGAATTGCTTTAGGTGTTGCTCAAGCTCTGAACTATTTGCACTCCTCTTTCTCCCCTCCTGTCGCCCATGGCAACTTGAAGGCTGCCAATATTCTACTGGACGAAAATCTGAAGCCTCGTGTTTGTGACTCTGGCTTGGCTATTTTGAAACCACTGACAAGCACTAAAGTTAAAATTCGGGCTTCTGAGATTGCTATTACAGACACAGGCTACACTTCACCTGATCATGGCCAACGGGGAATTTGCAGCACTAAGAGTGATGTCTTTGCCTTCGGGGTGTTGCTTCTGGAATTGTTAACTAGAAGAAAACCTTTCGATAGTTCTAGGCCAAAGGAAGAGCAAAATCTAGCAAAATGGGCTTCATCAAGGCTTCATGATAGCAACAGCTTGGAGCATATGGTGGATCCGGCAATTAAAAGGACATTCTCATCCAAAGCTCTTTCTCGTTTTGTTGATATCATCTCCCTTTGCATTCAGCCTGTAAAGGAATTCCGACCTCCAATGTCTGAAATCGTGGACTCTCTTGTATCATTTTCACAAAAGCTCGACATGTCAAAGAGTGGTGAAGCAGATGGTGTTGAATTTGATACTACCACCTTCCCCTTTATGCCATCACCCACATTGAGCTATGTGTCTGCCTGA 2181 0.4383 MVSNYAYASFIFVVVFLATSISRISAVTDSPDVTALQDLYRTLNYPLELLGWNGSDPCVESWTGVACSGSSVIHLKIQGLNLTGYLGGLLHNLQSLKHLDVSSNNIVGEIPYGLPPNATHINMACNYLSQNIPHSLPTMKKLRHLNLSHNFLYGPIGNVFTGLDNLREMDLSYNKFTGDLPSSFGSLSSLGRLFLQNNRFSGSVTYLAELPLIDLNIQENLFSGIIPQHFQTIPNLWIGGNKFYPLADSPPWAFPMDSVPTEHNTSLPPTTQANAIENFVPLKVRKHKKNRMGPGGIAFMVGGGTLLVTGFALFIAIRLNQLQKLRNFESNHSSSPPHPVSAAKEVSSTALNESLEIPPFNAASLLHPRRLPSQNHKRMGEASRRSLSERDRITGRTKIYTVAEVQLVTNSFSEDNLLGEGSLGPVYRAEFPHNKMFAVKNVHMAGLSLSEEEKFLDVVCVASRLKHPNIVSLKGYCLEHGQHLLVYDYVRNLTLDDALHSAAYKPLSGGLRLRIALGVAQALNYLHSSFSPPVAHGNLKAANILLDENLKPRVCDSGLAILKPLTSTKVKIRASEIAITDTGYTSPDHGQRGICSTKSDVFAFGVLLLELLTRRKPFDSSRPKEEQNLAKWASSRLHDSNSLEHMVDPAIKRTFSSKALSRFVDIISLCIQPVKEFRPPMSEIVDSLVSFSQKLDMSKSGEADGVEFDTTTFPFMPSPTLSYVSA* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2287 726 MobiDBLite consensus disorder prediction 374 390 - -
Lja5g2287 726 SUPERFAMILY Protein kinase-like (PK-like) 391 688 IPR011009 -
Lja5g2287 726 Gene3D Transferase(Phosphotransferase) domain 1 491 711 - -
Lja5g2287 726 PANTHER LEUCINE RICH REPEAT KINASE 2 9 702 - -
Lja5g2287 726 Gene3D Phosphorylase Kinase; domain 1 373 489 - -
Lja5g2287 726 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE 1-LIKE PROTEIN 9 702 - -
Lja5g2287 726 ProSiteProfiles Protein kinase domain profile. 412 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2287 726 Pfam Leucine Rich Repeat 141 154 IPR001611 GO:0005515
Lja5g2287 726 Pfam Protein tyrosine and serine/threonine kinase 416 688 IPR001245 GO:0004672|GO:0006468
Lja5g2287 726 MobiDBLite consensus disorder prediction 366 390 - -
Lja5g2287 726 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Lja5g2287 726 SUPERFAMILY L domain-like 30 237 - -
Lja5g2287 726 Gene3D Ribonuclease Inhibitor 30 258 IPR032675 -
Lja5g2287 726 Pfam Leucine rich repeat 159 200 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2287 Lja-Chr5 40761980 40766844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2287 12 726 Strubbelig Receptor Gene Family AT5G06820 53.288 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Lja5g2287 PK_Tyr_Ser-Thr 5.8e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2287 - - cam:101498175 1112.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2287 5 40761980 40766844 Lja5g2287 5 40761980 40766844 ECH
Lja1g1234 1 12736469 12746666 Lja5g2287 5 40761980 40766844 PCT