Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2282 ATGGGGTTTTCTTTGGCTATTGATCCAGAAGCAGAACAACAAAAACCACAACAAGAGCAAGAGTTTACAAAGTTTCTAGGCTCTTCCATGATCATGGCTTCTGGTGTAGTTAAGAGCACCAATTCAACAACAACAACCACAACTCGTCTTGAACCACCACTCCCACCACCATCTCACCATCTTCATCATCAAATTCAAGAAAATCAAATTTCTTTTGGAATGGTTAATCCATCTTCTTCATCATCCTCTATCCCTGGAAATTACCTAAGCAAAGATTCTGGTTCTTATGATTTGGGTGAATTGGATCAAGCATTTTTTTTGTATCTTGATGGTCAAGCTGATCCATCCAGTGTTCAAGACCAAAGACAGAACTCATCATCCTCAGGAATGAGACCACCACCAACTCTCAACATTTTCCCATCTCAGCCTATGCACGTGGCTCCACCATCCAATTCAAAGACCAGCATGCAATTACCTTCTCCACAAACTAGTGGTTCCAAGAGATCTACACAACCGTCCATGGAGTTGGCCAACCCCCGAAATCAAGCCATCACCTCTGCACCTCAACCACCAAAAACTGTAAAGCGAGAGAACAATCGAAAGGGTACTACCTCAAGTTCGGAACAGGAAGGACCCAAAACGCCAGATCCTAAGACACTGAGAAGACTAGCTCAGAATAGAGAGGCAGCAAGGAAAAGCAGGCTCAGGAAAAAGGCTTATGTTCAACAACTAGAGTCAAGTAGGATCAAGCTTAATCAGCTGGAACAAGAGTTACAGCGCGCCAGAGGTCAAGGCATGTTATTGAATGGAGGTGGGCTTTTAGGAGGAGAGCAAGGCATTTCTGTTTCCATGAACAACATAAGCTCAGAGGCTGCAATGTTTGACATGGAATATGCGAGGTGGTTAGAGGAGCACCACCGAGTAGTGTGCGAGATGAGGGCTGCGTTACAAGAGCACCTTCATGAAAACGAGCTTCGGTTATATGTGGAGAATTACTTGGCTCACTATAATCAATTACTGAGCCTCAAGAGCATGGTGGCCAAAACGGACGCGTTCCACCTTGTTTTTGGCATGTGGATGACACCAGCTGAACGCTGCTTCATGTGGATCGGTGGGTTTAGGCCATCTGAACTCATTAAGATTATTCTAAGTCAAATTGAGCCTCTCACGGAGCAACAAATACTTGGAATATGTGGATTGCAACAATCAACACAAGAGGCAGAAGAAGCTCTTTCTCAAGGACTTGAAGCTCTTAACCATTCTCTCTCAGATACTATAACATCTGACTCCTTGAGTTGTCCTCCAAACATGGCTAACTACATGGGACAGATGGCTGTTGCAATGAACAAGCTCTCCACTCTTGAAGGCTTTTTGAGACAGGCAGATAATCTTAGGCACCAGACCCTTCACCGTCTCCACCAGCTGCTAACAACACAGCAAGCGGCGAGGTGTTTGGTGGCAATATCTGAGTACTTCCATCGTCTACGAGCACTGAGTTCTCTGTGGTTGACTCGCCCTCGCCAAGAATAG 1530 0.4516 MGFSLAIDPEAEQQKPQQEQEFTKFLGSSMIMASGVVKSTNSTTTTTTRLEPPLPPPSHHLHHQIQENQISFGMVNPSSSSSSIPGNYLSKDSGSYDLGELDQAFFLYLDGQADPSSVQDQRQNSSSSGMRPPPTLNIFPSQPMHVAPPSNSKTSMQLPSPQTSGSKRSTQPSMELANPRNQAITSAPQPPKTVKRENNRKGTTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLNQLEQELQRARGQGMLLNGGGLLGGEQGISVSMNNISSEAAMFDMEYARWLEEHHRVVCEMRAALQEHLHENELRLYVENYLAHYNQLLSLKSMVAKTDAFHLVFGMWMTPAERCFMWIGGFRPSELIKIILSQIEPLTEQQILGICGLQQSTQEAEEALSQGLEALNHSLSDTITSDSLSCPPNMANYMGQMAVAMNKLSTLEGFLRQADNLRHQTLHRLHQLLTTQQAARCLVAISEYFHRLRALSSLWLTRPRQE* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2282 509 Coils Coil 237 264 - -
Lja5g2282 509 SUPERFAMILY Leucine zipper domain 218 260 IPR046347 GO:0003700|GO:0006355
Lja5g2282 509 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 216 260 IPR004827 GO:0003700|GO:0006355
Lja5g2282 509 MobiDBLite consensus disorder prediction 38 61 - -
Lja5g2282 509 Pfam Seed dormancy control 309 383 IPR025422 GO:0006351|GO:0043565
Lja5g2282 509 MobiDBLite consensus disorder prediction 144 193 - -
Lja5g2282 509 MobiDBLite consensus disorder prediction 114 221 - -
Lja5g2282 509 PANTHER TRANSCRIPTION FACTOR TGA9 102 508 - -
Lja5g2282 509 ProSiteProfiles DOG1 domain profile. 291 505 IPR025422 GO:0006351|GO:0043565
Lja5g2282 509 Gene3D - 217 268 - -
Lja5g2282 509 MobiDBLite consensus disorder prediction 114 135 - -
Lja5g2282 509 Pfam bZIP transcription factor 218 256 IPR004827 GO:0003700|GO:0006355
Lja5g2282 509 SMART brlzneu 214 287 IPR004827 GO:0003700|GO:0006355
Lja5g2282 509 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 221 236 IPR004827 GO:0003700|GO:0006355
Lja5g2282 509 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 102 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2282 Lja-Chr5 40368709 40375779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2282 86 509 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 62.613 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lja5g2282 DOG1 5.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2282 K14431 - gmx:100800059 731.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2282 5 40368709 40375779 Lja5g2282 5 40368709 40375779 ECH
Lja1g1239 1 12798435 12806326 Lja5g2282 5 40368709 40375779 PCT