Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2280 ATGCAATCCACCTCACGTGCACCAGCTCAAAAGTTGGGACACAAAGAACCCACGAACAATCTCAAACGAGCCAGGACTAATAAGGGTCATTTCGAAGCCTATATGTGGAAAAGTGACCCTAACCATGCACGAAGAGGAAAGAAAGGAGCATTTGAAAATGAAATTGAAGCAGCAAGAGCTCATGATTTAATTGCCATTAAGAATCGTGGAGATTCTTTGCGTACCAATTTTCCGTTGAGTTCCTATACGAAGGAAATATCTGAAATGGAAACTATGAGCATAGAAGATTGTATTCTTACTATTAGAAGAAACGCCAAGATCAAATGGGAATCAGGATTGGAAAATGCTAATGGGATGCAAACTCTAGACATGGGTATATTTGACCATAGTTTTTAA 396 0.3914 MQSTSRAPAQKLGHKEPTNNLKRARTNKGHFEAYMWKSDPNHARRGKKGAFENEIEAARAHDLIAIKNRGDSLRTNFPLSSYTKEISEMETMSIEDCILTIRRNAKIKWESGLENANGMQTLDMGIFDHSF* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2280 131 MobiDBLite consensus disorder prediction 16 47 - -
Lja5g2280 131 ProSiteProfiles AP2/ERF domain profile. 13 78 IPR001471 GO:0003700|GO:0006355
Lja5g2280 131 SMART rav1_2 23 84 IPR001471 GO:0003700|GO:0006355
Lja5g2280 131 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL7 8 104 - -
Lja5g2280 131 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 104 - -
Lja5g2280 131 MobiDBLite consensus disorder prediction 1 47 - -
Lja5g2280 131 Gene3D AP2/ERF domain 22 80 IPR036955 GO:0003700|GO:0006355
Lja5g2280 131 SUPERFAMILY DNA-binding domain 26 80 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2280 Lja-Chr5 40102298 40104490 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2280 29 105 AP2-EREBP Transcription Factor Family AT5G65510 39.759 3.99e-14 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2280 K09285 - lja:Lj0g3v0119889.1 97.8265