Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2278 ATGGCTGAACTTCAAACCTACATCAAACTCCTCATCGTGTGGATACTCTCCACAATCGCAGTACTAGCCATTCTCACAAGAATACACAACAAGAATAACCGCCACAAAAATCCACCAAGCCCTCCATCTCTTCCCATCATCGGACACCTCCACCTTATCTTCCAAATCCCTCACCAAAGTTTTCACAAGCTCTCATCTCGCTATGGACCCATCATGAAACTCTTCCTCGGCTCCTTGCCTTGTTTGGTGGTTTCCAGTCCAGACATGGCCAAGGAGGTTCTTAAAACCAACGAATCTTCCTTCTCGAACCGGTTCGTGAGCACCACGGTTCATCACCTATCGTACAACTTAAATGGCTTCATATTCACGCCTTACGGAGAGTATTGGAAGTTCGTGAAGAAGCTCTGCATGTCGGAGCTTCTCGGCGGCCGGACCCTGAGTAATCTCCTTTCCGTGAGACAACAAGAGACTCTGCGGTTTCTGAAGGTTCTACAAAGAAAAGGGGAAGCAGGTGAGGCCGTTGATCTCGGCGGCGAGCTCTTGACTCTAACCAACAGTGTTATCACGAGGATGACCATGGGGAGAGCGTGTTCTGGAAACGATGATGATGGTGACGTGGAAGAAATCAGGAAGATGGTGATGGACACTGCGGAGCTTGCAGGGAAGTTTAATGTGACGGATTTTATTTGGTTTTTTAAGTGTTTGGGTTTGCAGGGAGTGAGCAAAAGGGTTAAGGAGATTCTGAAGAGGTTTGATAACATGATGGAGAGAGTCATGCTGGAGCATGAAGAGGAGAGAAGGAGAAGGAAGGAAGGAGGGGAAGGTGGTGATATTCGGAATCTGCTTGATATTTTGCTGGAAATACATGAGGATGAGACCACTAAGACAAGATTGAGCAGAGAAAACATCAAGGCTCTCATCATGGACATATTCATGGCAGGAACAGACGCATCTGCTACAACCATGGAATGGGCTCTATCTGAGTTAATCAACAATCCAGAAGTGATGGAGAAAGCAAGAAAAGAAATCGATTCAGTGGCAGGAAATAGCAGTAGGTTAATAGAAGAATCAGATCTTCCCAATCTTCCTTACTTGCGAGCCATTGTCAAAGAAACACTAAGGATTCACCCCACATCGCCATTCATAGCGAGAGAGTCATCAGAAAAATCTTACATTTGTGGCTATGAGATTCCAGAAAAGACCTTGCTTTATGTGAATTTGTGGTCAATGGGTAGGGACCCCAAACTGTGGGATAATCCACTTGAGTTCAGGCCAGAGAGGTTTATGGGTGAAGAGAATAACCAAGTGGATTTGAGGGGACAACATTTCCAACTAATGCCATTTGGTACTGGAAGAAGGGCTTGTCCTGGAGCCTCACTTGCACTTCAGGTTGTACCTACTAATCTTGCTGCTATGGTTCAGTGTTTTGAATGGAAAGTTGATGGGAAAGTGAACATGGATGAGAAACCCGCCATGACACTACCAAGGGCTTGTCCGTTAATTTCTGTACCAGTTCCTCGCTTTTGTCGTATTCCTGCAAGTGTTTAA 1548 0.4561 MAELQTYIKLLIVWILSTIAVLAILTRIHNKNNRHKNPPSPPSLPIIGHLHLIFQIPHQSFHKLSSRYGPIMKLFLGSLPCLVVSSPDMAKEVLKTNESSFSNRFVSTTVHHLSYNLNGFIFTPYGEYWKFVKKLCMSELLGGRTLSNLLSVRQQETLRFLKVLQRKGEAGEAVDLGGELLTLTNSVITRMTMGRACSGNDDDGDVEEIRKMVMDTAELAGKFNVTDFIWFFKCLGLQGVSKRVKEILKRFDNMMERVMLEHEEERRRRKEGGEGGDIRNLLDILLEIHEDETTKTRLSRENIKALIMDIFMAGTDASATTMEWALSELINNPEVMEKARKEIDSVAGNSSRLIEESDLPNLPYLRAIVKETLRIHPTSPFIARESSEKSYICGYEIPEKTLLYVNLWSMGRDPKLWDNPLEFRPERFMGEENNQVDLRGQHFQLMPFGTGRRACPGASLALQVVPTNLAAMVQCFEWKVDGKVNMDEKPAMTLPRACPLISVPVPRFCRIPASV* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2278 515 PRINTS E-class P450 group I signature 302 319 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja5g2278 515 PRINTS E-class P450 group I signature 322 348 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja5g2278 515 PRINTS E-class P450 group I signature 183 201 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja5g2278 515 PRINTS E-class P450 group I signature 89 110 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja5g2278 515 PRINTS E-class P450 group I signature 445 455 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja5g2278 515 PRINTS E-class P450 group I signature 366 384 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja5g2278 515 PRINTS E-class P450 group I signature 455 478 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja5g2278 515 PRINTS E-class P450 group I signature 65 84 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja5g2278 515 PRINTS E-class P450 group I signature 406 430 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja5g2278 515 PANTHER CYTOCHROME P450 FAMILY PROTEIN 3 512 - -
Lja5g2278 515 Pfam Cytochrome P450 38 489 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja5g2278 515 Gene3D Cytochrome P450 23 499 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja5g2278 515 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 3 512 - -
Lja5g2278 515 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 448 457 IPR017972 GO:0005506|GO:0016705
Lja5g2278 515 SUPERFAMILY Cytochrome P450 38 507 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja5g2278 515 Coils Coil 336 356 - -
Lja5g2278 515 PRINTS P450 superfamily signature 313 330 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja5g2278 515 PRINTS P450 superfamily signature 455 466 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja5g2278 515 PRINTS P450 superfamily signature 446 455 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja5g2278 515 PRINTS P450 superfamily signature 367 378 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2278 Lja-Chr5 40008420 40011296 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2278 1 507 Cytochrome P450 AT5G06900 47.929 5.92e-170 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2278 K24188 - gmx:100805931 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2278 5 40008420 40011296 Lja5g2278 5 40008420 40011296 ECH
Lja1g1246 1 12848457 12850725 Lja5g2278 5 40008420 40011296 PCT
Lja5g2278 5 40008420 40011296 Lja1g1247 1 12852091 12856200 PCT