Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2275 ATGGAGAGTATTCTAGGATACATGCCAATCTTTCTGATTTTTCTAGCCTCGCTGATATTTCTCAAATCTATATTTCCCGGAGCTACCTCAAAATTTCGCCTTCCACCTAGTCCAATAGCCTTACCAGTTATAGGACACTTCCACTTATTAAAACCATCCCTTCACAAAGCCATTCAAAACATCTCAAATCGCCATGGACCCTTAATTCACCTCTATCTTGGTTCCAATCCCATGGTCTTTGTTTCCTCTGCAGAAATTGCCAGAGAGATTTTAAAAGCCAATGAATTATCTTTCTCCAACCGTTCCGCGAACGTCGCAATCCGTTACCTCACTTATGATGCGTCCGATTTAGGATTTGCCCCTTATGGTACCTACTGGAAGTTCATGAAAAAACTCTGCATGTCAGAGCTTCTGAACGGGAAAATGCTTGATCAACTGTACCCCATAAGGCAAGAGGAGATAAAGAGGTTCTTGCAAGTGATACAGAAGAAATCCCAAGCCTACACGGCGGTCAACGTTGCGGATGAGCTTTTGAAGCTAACAAACAGCATAGTGATGAGGATGGCCATAAGCAAAAGCTGTTTCGACGTGGATGATGAAGCTGAGAAGGTCACAGAGAGGGTGAAGGAGTCTGCGAAGCTGAGTGGGAAATTTAATCTTGCTGATCATTTTTGGTTTTTTAAGGGATTGGATGTTCAGGGAATGGGGAAGAGGCTTAAAGAGGTTCGTGACAGGTTTGACAACATGATGGAAAGTATCATTCAGGAGCATGAAGAAACAAGGAATAAATCTAGCAGAAAGGATGTATCAAGGGATGTACTCGATGCCCTTTTGAGTATTTATGAAGATAAAAGCTCAGAAGTCAAAATAACCAGAGACAACATTAAAGCCTTCTTGGTGGATATGTTCACAGGTGGGACAGATACAACAGCCGTTACTCTAGAATGGGCACTGGCGGAATTGATTAACCACCCAATTGTGATGGAGAAAGCAAGGAAGGAGATTGAGTATGTGATTGGAAATGAAAGAATAGTAGTGGAATCAGATATAGCTCATCTTCCTTATCTCCAAGCTATTGTGAAGGAAACCCTTAGGCTTCACCCTCCAGCTCCATTTATAGCGAGAGAGTCAACTGAGAACAGTAAAATTGGTGGATATGACATCCCAGAAAAAACTAAGGTTTTGATTAATGTGTGGGCTATTGGGAGGGATTCAAAGTACTGGGATAACCCTCTTGAGTTCTTACCAGAAAGGTTCTTACTAAACGATGAGAATGGTACTAAAAGCAATATTGAAGTTAAGGGACAACATTTTCAGCTTTTGCCTTTTGGGAGTGGGAGAAGAGGGTGTCCTGGAATATCACTAGCACTCAATGTTGCTCACACCACCCTTGCTGCTATGATTCAATGCTTTGAATGGAATGGTGAAGATGGAGGGAATATTGGTAGCGTCGACATGACAGAGGGTCCTTCAATGATTCTTTCAAGAGTGAAACCACTGATTTGCGTCCCCAAAATTAGACTCATCCCATTCTCCACCGTGTGA 1545 0.4227 MESILGYMPIFLIFLASLIFLKSIFPGATSKFRLPPSPIALPVIGHFHLLKPSLHKAIQNISNRHGPLIHLYLGSNPMVFVSSAEIAREILKANELSFSNRSANVAIRYLTYDASDLGFAPYGTYWKFMKKLCMSELLNGKMLDQLYPIRQEEIKRFLQVIQKKSQAYTAVNVADELLKLTNSIVMRMAISKSCFDVDDEAEKVTERVKESAKLSGKFNLADHFWFFKGLDVQGMGKRLKEVRDRFDNMMESIIQEHEETRNKSSRKDVSRDVLDALLSIYEDKSSEVKITRDNIKAFLVDMFTGGTDTTAVTLEWALAELINHPIVMEKARKEIEYVIGNERIVVESDIAHLPYLQAIVKETLRLHPPAPFIARESTENSKIGGYDIPEKTKVLINVWAIGRDSKYWDNPLEFLPERFLLNDENGTKSNIEVKGQHFQLLPFGSGRRGCPGISLALNVAHTTLAAMIQCFEWNGEDGGNIGSVDMTEGPSMILSRVKPLICVPKIRLIPFSTV* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2275 514 Pfam Cytochrome P450 35 492 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja5g2275 514 Gene3D Cytochrome P450 27 502 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja5g2275 514 PANTHER CYTOCHROME P450 93A2 7 511 - -
Lja5g2275 514 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 443 452 IPR017972 GO:0005506|GO:0016705
Lja5g2275 514 PRINTS E-class P450 group I signature 450 473 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja5g2275 514 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja5g2275 514 PRINTS E-class P450 group I signature 314 340 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja5g2275 514 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja5g2275 514 PRINTS E-class P450 group I signature 440 450 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja5g2275 514 PRINTS E-class P450 group I signature 294 311 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja5g2275 514 PRINTS E-class P450 group I signature 357 375 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja5g2275 514 PRINTS E-class P450 group I signature 397 421 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja5g2275 514 SUPERFAMILY Cytochrome P450 35 507 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja5g2275 514 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 7 511 - -
Lja5g2275 514 PRINTS P450 superfamily signature 305 322 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja5g2275 514 PRINTS P450 superfamily signature 441 450 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja5g2275 514 PRINTS P450 superfamily signature 358 369 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2275 Lja-Chr5 39746475 39748771 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2275 10 504 Cytochrome P450 AT5G06900 47.686 2.79e-170 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2275 K24188 - gmx:100811919 686.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2275 5 39746475 39748771 Lja5g2275 5 39746475 39748771 ECH
Lja1g1247 1 12852091 12856200 Lja5g2275 5 39746475 39748771 PCT