Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2271 ATGGATTCCAATCAGAATTATCAACTACAACAACAGAATCAAAGTTCTTCTGGGTTGCTTCGTTTTCGCTCTGCGCCGAGTTCATTTCTTTCAAATCTCACACCTTCTGTTATCAACAACGAGAGATTGCTCAACAGATTTGCGAGTTACGGTGCAGCTGATACCAATAGCATTAGCATTAGCTGTAACGATACCTCTGCAGCTTCGCCTAGCTTCCAAGATTTCGAAGAGAACAAGCCTTTTTCTAAGGGCATGAATTCGCAGCAACAGGGTTATGGTGGTGCTGGTGCTAGTGCTGGGTTACCCCCTCACTATCCGAGGCATGGTTCGAGTTCCGCCGCCATGGATGGATATCTTCTCAGGCAGGGTAGCTCCCCTGCTAGCCTTTTCTCCAACGGTTCCTTTCAAAATGGGTTTGGCGCCATGAAATGTGTTGGAAACTATGATGCAGTGAATGGCAATAATGGCCAAATTAGTCCATCTATTGATAGGTTGAAGAGTCAGATTAGCTTCTCATCAAGAAGTGCTTCTTCTTTGGGAATGCTGTCACAGATCTCTGAAATAGAGGGTGAGGAGGACATTGGGGCAACTAGCCCTGATGATGGGAGGCAGGGAGGTGGCAATGGCCATGGATTCCCCTACACGTCTTGGAATGATACTCCACAACTCTCAGAGAATTTCATTGGCTTGAAAAGAGGGCGAAGTGGTAATGAAAGGATGTTTTCTGAACTTCAGAATGGAGAGCTAGGAAGTCAGGTTCATACGTTAACTCATCACTTGAGTTTACCGAAAACTTCAGCAGAGATGGCTGCTATGGATAAGTTGCTTCAGTTCCCTGATTCTGTACCTTGTAAAATCAGAGCAAAACGAGGCTGTGCTACTCATCCTCGAAGCATTGCCGAACGGGTGAGAAGAACTCGGATCAGTGAACGAATGAGAAAACTACAAGAGCTTGTTCCAAACATGGACAAGCAAACTAACACATCAGACATGTTGGACTTGGCTGTTGATTACATTAAAGATCTTCAGAAACAATTCAAGACTCTAAGTGAAAAAAGGGCAAAGTGCAAATGTGTGAGCACGCAAAAGGCAGAGACAAACCCAATTGCTTGA 1113 0.4483 MDSNQNYQLQQQNQSSSGLLRFRSAPSSFLSNLTPSVINNERLLNRFASYGAADTNSISISCNDTSAASPSFQDFEENKPFSKGMNSQQQGYGGAGASAGLPPHYPRHGSSSAAMDGYLLRQGSSPASLFSNGSFQNGFGAMKCVGNYDAVNGNNGQISPSIDRLKSQISFSSRSASSLGMLSQISEIEGEEDIGATSPDDGRQGGGNGHGFPYTSWNDTPQLSENFIGLKRGRSGNERMFSELQNGELGSQVHTLTHHLSLPKTSAEMAAMDKLLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQKQFKTLSEKRAKCKCVSTQKAETNPIA* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2271 370 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 11 362 - -
Lja5g2271 370 MobiDBLite consensus disorder prediction 82 108 - -
Lja5g2271 370 MobiDBLite consensus disorder prediction 193 220 - -
Lja5g2271 370 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 295 358 IPR036638 GO:0046983
Lja5g2271 370 SMART finulus 298 348 IPR011598 GO:0046983
Lja5g2271 370 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 292 342 IPR011598 GO:0046983
Lja5g2271 370 Gene3D - 293 365 IPR036638 GO:0046983
Lja5g2271 370 PANTHER TRANSCRIPTION FACTOR BHLH130 11 362 - -
Lja5g2271 370 Pfam Helix-loop-helix DNA-binding domain 297 343 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2271 Lja-Chr5 39627015 39630348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2271 1 348 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 45.932 7.46e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja5g2271 HLH 7.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2271 - - lja:Lj0g3v0131909.1 698.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2271 5 39627015 39630348 Lja5g2271 5 39627015 39630348 ECH
Lja5g2271 5 39627015 39630348 Lja3g0633 3 6337161 6341264 ECH
Lja5g2271 5 39627015 39630348 Lja3g2706 3 39183883 39187509 ECH
Lja1g1251 1 12881581 12885176 Lja5g2271 5 39627015 39630348 PCT