Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2268 ATGGCGATTATACGGAGCTTAATCCAGGACATGAGATCGAGGTCTCAGAGGGTGGTGGTGGAGGAGGAGTCTGCGGCGGTGGAGGTGGTCGGTGATGGGTTGAGGCAGAGCTGTTGGGCTAACATGCCGCAGGAGCTTCTCCGTGAGGTGCTTCTCCGAATCGAGGCGTCGGAGGAGAAGTGGCCGGCGAGGAAGAGTGTGGTGGCGTGTGCTGGAGTTTGCCGGAGCTGGAGGGAGATCACCAAGGACATCGTTAAGAAACCTGAGTTTTCATCCAAGTTAACCTTCCCCATCTCTGTTAAGCAGCCTGGTCCAAGGGAAAATCTCCTCCAGTGCTTTATAAGCCGCAACCGGACCACTCAAACATATTATTTGTATCTCAATTTAACTAGTGCACTATGTGATGATGGAAAGTTCCTTCTTGCTGCACGCAAATGCAGGCGTCCCACCTGCACAGATTATATAATGTCTTTACATGCAGATGATATGTCAAGGGGAAGCAACACCTATGTTGGGAAACTCAGATCAAATTTTCTGGGAACCAAGTTCACAATCTATGATGGCCAGCCACCTCATGCAGGGGCAAAGATTACAAAAAGTCGCTCCACTAGGCTGGTGAATCTAAAACAAGTTTCACCCAAGGTCCCAACAGGAAACTATCCAATAGCTCACATCTCATACGAATTGAATGTGCTAGGTTCCAGGGGGCCTAGGCGAATGCACTGTGTCATGGATTCCATTCCGACCTCTGCAATTGAACCAGGAGGGGTAGCCCCTACACAGACCGAATTTTCTCTTAACAACGTAGATATGTTCCCCTCATTCCCCTTTTTCAGATCAAAGTCAAGTCGTGCCGAAAACTTTGTCTGGACCTCTGGCTGA 882 0.4932 MAIIRSLIQDMRSRSQRVVVEEESAAVEVVGDGLRQSCWANMPQELLREVLLRIEASEEKWPARKSVVACAGVCRSWREITKDIVKKPEFSSKLTFPISVKQPGPRENLLQCFISRNRTTQTYYLYLNLTSALCDDGKFLLAARKCRRPTCTDYIMSLHADDMSRGSNTYVGKLRSNFLGTKFTIYDGQPPHAGAKITKSRSTRLVNLKQVSPKVPTGNYPIAHISYELNVLGSRGPRRMHCVMDSIPTSAIEPGGVAPTQTEFSLNNVDMFPSFPFFRSKSSRAENFVWTSG* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2268 293 Gene3D - 33 86 - -
Lja5g2268 293 SUPERFAMILY F-box domain 27 83 IPR036047 GO:0005515
Lja5g2268 293 Pfam Tub family 100 269 IPR000007 -
Lja5g2268 293 Pfam F-box domain 39 88 IPR001810 GO:0005515
Lja5g2268 293 SUPERFAMILY Tubby C-terminal domain-like 88 269 IPR025659 -
Lja5g2268 293 Gene3D Tubby Protein; Chain A 99 288 IPR025659 -
Lja5g2268 293 PRINTS Tubby superfamily signature 154 170 IPR000007 -
Lja5g2268 293 PRINTS Tubby superfamily signature 170 194 IPR000007 -
Lja5g2268 293 PRINTS Tubby superfamily signature 219 246 IPR000007 -
Lja5g2268 293 PANTHER TUBBY-RELATED 5 288 - -
Lja5g2268 293 PANTHER TUBBY-LIKE F-BOX PROTEIN 3-RELATED 5 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2268 Lja-Chr5 39300254 39304111 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2268 4 270 TUB Transcription Factor Family AT2G47900 65.278 7.90e-137 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lja5g2268 Tub 2.9e-57 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2268 K19600 - lja:Lj0g3v0087609.1 537.724