Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2263 ATGGAGCAAACCACACTCGACTCGTTTCAGTTCAACGAAGAAATCCAGGGACTCATGGCTCCGGCGCCGGAATCCGCCAGCTCCTTCACCGCGCTTCTCGAGCTGCCGCCCACGCAGGCCGTCGATCTCCTCCACTCGCCGCCTCGCCACGTCAGCAATCCGGAACACCATACGTTGAGCGAGAATTTGACCTTTCTTTCCAACAACGCCGCCAGATTCTCCGTGTTCGCCGCAGGAAACTCGCCGCCGCCGCTGCAAGTGAAGCGTGAGTCGCCGGAGACCGATTCAAACCCGAGCTCGGCGCAAGGCGGTGGCTACGTCTCTGATCCTGCCGTCGAGAACATGAACCCGAAGTGCGTCAAGAGGAAGGAGCGAGAGAAGAAGGTTAAAGTGTCGTCGAAGAAGAGCAAAAGCGCCATCGCCGCCGACGATAGATGCGGCGGCGATGGCGACGGCGACGGCGAGAAGCTTCCGTACGTGCACGTTCGCGTTCGTCGAGGTCAAGCTACTGATAGTCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCGGATGAAACTTTTACAAGAGCTAGTCCCTGGTTGCAACAAGATATCAGGAACAGCATTGGTTCTAGATAATATCATCAACCATGTGCAATCTCTGCAGCATGAAGTGGAGATTTTATCAATGAAACTGGCATCAGCTAACCCAATAATTGATTTCAACCTTGACAGCATATTGGCTACCGAAGGCGTGTCCCTAACAGATAGTAACTTCCCCGCCACAGTTGCGCCCATCGCATGGCCCGAAATCCCTCTGAACGAAAACAGACAACATTATCAGCAATCATGGCAATTCGATGCATTCCACCAACCGCTTTGGGGTAGGGAAGAATACAACCCTAATTTTATGACTCCTGAAAACTCGCTTTTGAGTTATGACTCATCAGTAAATTCAGTATCTCTGCACTCAAATCAGTTAAAGATGGAGCTCTGA 987 0.5177 MEQTTLDSFQFNEEIQGLMAPAPESASSFTALLELPPTQAVDLLHSPPRHVSNPEHHTLSENLTFLSNNAARFSVFAAGNSPPPLQVKRESPETDSNPSSAQGGGYVSDPAVENMNPKCVKRKEREKKVKVSSKKSKSAIAADDRCGGDGDGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDNIINHVQSLQHEVEILSMKLASANPIIDFNLDSILATEGVSLTDSNFPATVAPIAWPEIPLNENRQHYQQSWQFDAFHQPLWGREEYNPNFMTPENSLLSYDSSVNSVSLHSNQLKMEL* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2263 328 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 328 IPR024097 GO:0006355
Lja5g2263 328 MobiDBLite consensus disorder prediction 131 155 - -
Lja5g2263 328 MobiDBLite consensus disorder prediction 77 155 - -
Lja5g2263 328 CDD bHLH_AtBPE_like 158 243 - -
Lja5g2263 328 Gene3D - 165 236 IPR036638 GO:0046983
Lja5g2263 328 MobiDBLite consensus disorder prediction 90 104 - -
Lja5g2263 328 Pfam Helix-loop-helix DNA-binding domain 172 219 IPR011598 GO:0046983
Lja5g2263 328 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 328 - -
Lja5g2263 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 218 IPR011598 GO:0046983
Lja5g2263 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 236 IPR036638 GO:0046983
Lja5g2263 328 SMART finulus 174 224 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2263 Lja-Chr5 39176764 39182885 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2263 2 328 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 45.503 2.95e-83 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja5g2263 HLH 2.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2263 - - aprc:113872810 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2263 5 39176764 39182885 Lja5g2263 5 39176764 39182885 ECH
Lja1g1253 1 12911703 12916716 Lja5g2263 5 39176764 39182885 PCT