Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2254 ATGGAGTCTCATGAAGAAACAGGATGCCAGGCTCCAGAACGTCCCATACTTTGCATTAATAATTGTGGCTTCTTTGGAAGGGCTGCTACTATGAATATGTGTTCCAAATGTTACAAGGACATGCTGTTGAAGCAGGAACAGGACAAACTTGCAGCAGCGTCGGTTGAAAACATTGTGAACGGAGCCTCCGGCTGCAGCGGGAAACAGGCTCTGACCGTAGATGTACAAGTTGGAAATGCAGAGTTCAAGACAGTCTGCACTGAGATCCGCGAGGATTCATCTTCTGGTGAGAATTCGGAGGTGAAAGCCAAGACAGGTCCCAACAGATGTGCTACTTGTCGGAAGCGTGTTGGATTCACTGGTTTCAGCTGCAAGTGCGGAAATCTCTTTTGTGCAATTCACCGGTATTCTGACAAACACGATTGCCCCTTTGATTATCAGACTCTTGGTCGGGATTCCATAGCGAAAGCCAACCCTGTAATTAAGGCTGATAAGCTTGACAAAATCTAG 510 0.4686 MESHEETGCQAPERPILCINNCGFFGRAATMNMCSKCYKDMLLKQEQDKLAAASVENIVNGASGCSGKQALTVDVQVGNAEFKTVCTEIREDSSSGENSEVKAKTGPNRCATCRKRVGFTGFSCKCGNLFCAIHRYSDKHDCPFDYQTLGRDSIAKANPVIKADKLDKI* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2254 169 Gene3D - 1 60 - -
Lja5g2254 169 SUPERFAMILY AN1-like Zinc finger 95 164 IPR035896 -
Lja5g2254 169 Pfam A20-like zinc finger 16 39 IPR002653 GO:0003677|GO:0008270
Lja5g2254 169 Gene3D - 84 165 IPR035896 -
Lja5g2254 169 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 8 2 169 - -
Lja5g2254 169 Pfam AN1-like Zinc finger 110 147 IPR000058 GO:0008270
Lja5g2254 169 SMART AN1_Zf_4 110 147 IPR000058 GO:0008270
Lja5g2254 169 ProSiteProfiles Zinc finger AN1-type profile. 104 150 IPR000058 GO:0008270
Lja5g2254 169 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Lja5g2254 169 PANTHER AN1-TYPE ZINC FINGER PROTEIN 2 169 - -
Lja5g2254 169 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Lja5g2254 169 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2254 Lja-Chr5 38717208 38719502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2254 5 169 C2H2 Transcription Factor Family AT3G52800 43.452 1.18e-41 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2254 - - gmx:100499995 287.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2254 5 38717208 38719502 Lja5g2254 5 38717208 38719502 ECH
Lja5g2254 5 38717208 38719502 Lja3g0638 3 6411137 6414898 ECH