Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2249 ATGGAGAATCACAAGATGCAAGACTATGAGGTCATAGAGAAACTCGGAAGAGGAGCATTAGGTACAACTTTTCTCGTTCTCCACAACACTGAGAGAAAGAGGTATGTGCTAAAGAAGATTCGCTTGGCCAAGCAATCAGACAAGTCCAAACTGACAGCGCACCAAGAGATGGACCTGATAGCCAATCTAAATTACCCTTATATTGTGGAATTCAAAGATGCTTGGGTGGAGAAGGAGGACTACATATGCATTGTAACTGGCTACTGTGAAAGAGGAGACATGGCTGATAATATAAAGAAAGCTCGAGGAACTTTTTTTCCTGAGGAGAAAGTCTGTAAATGGATGACTCAATTGTTGCTAGCCGTGGACTACCTGCACTCCAATCGTGTGCTTCACAGAGATCTTAAGTGTTCCAACATATTCCTCACCAAAGAAAATAATATTCGGCTAGGTGACTTTGGTCTTGCAAAGCTACTTAACAGCGATGACTCTGCTTCCCCGGTTGTTGGAACTCCAAACTACATGTGTCCTGAGATCCTTGCTGCTATGCCTTATGGTTATAAATCTGATATATGGTCTCTTGGTTGCTGCATGTTTGAAATTGCTGCACATCAACCGCCATTTCGTGCTCCAGACAGGGCTGGACTCATCAATAAAATAAATAGAGGCACCATTTCTCCACTGCCAATTGTTTACTCTTCCACACTGAAACAGCTTATCAAGAGCATGCTGAGGAAAAACCCAGAGCATAGACCAACAGCAGCAGAATTGTTAAGGCATTCTCATTTACAACCTTTCGTTCTTCGCTGTCGTAATGCTTCATCTGTGTTTCTACCAGTACATCTCATTAGTTGTAACTCAAAGGATAAAACAAAAAAGTCTGACGGACCAAGTGGCGGCGAAGACCACAGGGACAACGTAGCAGGATTAGTAAACCATTTGGAGCGGGTTTATTCAATTGAGGGAAATGGAGATGTACAGACAAGCAACTGGCGTAATGACTGCAAGCTAGCAGTGTCAACCAGCACAGAAGACAACCTTGAGACCAAAATGGTTGATCCTTTCAGCTTCTCAGTGGAATTCTTTACTAGTGTGGACAAACCTGAGCACTCCTGTAAATCAATTATTTCAAGTGTAGACAGCAATTTCAATGATAAAGATGGGTCCATGGATGAGATTATGTCAAACAGCACTCTAGATTCTGTGCATAAAGAACAAGGGTTTGGTGCTGAGTATTTTCACAAGTCAGATGCAATTGACATGAAGGCAGTGACTACAAAAGTTGAAGGTACTTTTTCCAATGAAGGTTTTGATAAAGCTGAAGCACAAAGAGAAGATTGCAAACCTGAGAACTACAGTAAATCAATTATATCCAGTGAACACAGCAAAAACAATGATAAAGCAGTGTCAATAGATGAGATCTTATCAAAGAGCACACTAGATTTTTTGCATCTAGAACAAGAATTAGCTGCTATATATCAGAAGTCAGATGCAATTGACATAGATGCAGTGACTACAATAGTTGAAGGTACTTATTCCAATTCAGGTTTTGATAAAGATGAAGTACAGAGGAAAGATGCAAAACCTGAGGACTCCAATAAATCAAAAATTTCCAGTGAAGACAGCAATGGCAATGATAAAGATGTGTCCACTAATGAGATTATATCAGAGAGCTTACCTGATTATGTGATTGAAGAACAAGGATTTGCTGCTGAACATTTTCAGAAGTCAGATGCAATTGACGTAGATGCAGTTACTACAATAGTTGAAGGTACTTTTTCCAATGCAGGTTTTGATAAAGCTGAAGAACAGAGAAAAGATGCCAAAGCTAAGGACTTCTATAAATCAATTATTTCGAGTGAAGACAGCAATGGAAATGATAAAGATGTGTCCACTAATGAGATCACATCAAAGAGCATACTAGCTGTGCATGAAGAACTAGGATTTGCTGCTGAACATTTTCAGAAGTCAGAAGCAATTGACATAAATGCAGTGACCACAAAAGATGAAGGTTTTGATAAAGCTGAAGCACAGCAAAAAGATGCAAAACCTGAGGACTCCTATAAATCAATTATTTCCAGTGAAGACACGAATGGCAATGATAAATATGTGTCCATTGATGAGATCACATCAAAGAGCACACTGGATTCTGTGGAAGAAGAACAGGAATTTGCTGCTGAACATTCTCACGAGTCAGATATATTTGTCATAAATACAATAACTACAAAAGTTGAAGGTACTTTTTCCCATGAAGGTTTTGATATAGCTGGATCACAGGGAGAAAATGCAAGGCCTGAGGACTCCAATAAATCAAATATTTCCTGTGAAGACAGAAATGTCAATGATAAAGATATGTCAGTTGATGAGATGACATCAAAGAGCATACTATACTCGGTGCATGAAGAAAAAGGAAATGCTGCTGAACATATTTTGAAGTCAGAAGCAAATGACATAGATGCAACAAATGTTGAAGGTGGTTTTTCTAACACAGGTTGGGATGATAAAGCTGAAGCACAGAGACATGATGCCAAACCTGATGACTCCTGTAAATCAATTATTTCCCGTGAAGACATCAATGCCAATGATGAAGATGTGTCAATTGATGACATCACATCAAAGAGCACACTAGATCCTGTTCTAGAAGAACAAGGATTTACTGCTGAACATTTTCAAGAGTTCGACATCATTGACATAAATGCGGTCACTACAAAAGTTGAAGGCAGTTTTTGCACTGAAGTTTTTGATAAAGCTGAATCACAGGGAGAAAATACTAGACCTGAGGTGTCCAGGAAATCAATAGTGTCCAGTGAAGATAGCAGTGGCAATGATAAAGTTGGGTCCTTTGATGAGGGAAGGCCATCACCAATTGTGCATCCTGTTAGGGTTGAACAAGACCCTGAAACTGGAAACTGCTTGAAGGAAAGTGAAAAGCCTAAAGCATTCTCAGAAGACTTAGACTTAAACAGCTTAACTTCTGAGTGTAATGATACACTTCAGGGTAAGGATGAAGTCAGAGAAAACACACACACAATCAGTTGTTCCATGCAGAAAGAAAATGATAAAGCCAATGTTATTGATAAGACACCAAATGACATTTCATTAAGTAGACATGTATTAGTAGGTGGTGGTGATAAAACAAAGAGGAGGGTTGATATTTCGTGCCAACAAAGAGCTGATGCTCTGGAATCTCTGCTTGAGTTATGTGCACAACTACTTAAGCAAGGAAAGCTTGAAGAGCTTGCTGCCGTGCTAAGACCATTTGGAGAAGATGTAGTCTCATCAAGGGAAACAGCAATATGGCTGACAAAAAGCCTCATCTCCTCACAAAAAATTAATCCAGAAACCTAG 3348 0.3943 MENHKMQDYEVIEKLGRGALGTTFLVLHNTERKRYVLKKIRLAKQSDKSKLTAHQEMDLIANLNYPYIVEFKDAWVEKEDYICIVTGYCERGDMADNIKKARGTFFPEEKVCKWMTQLLLAVDYLHSNRVLHRDLKCSNIFLTKENNIRLGDFGLAKLLNSDDSASPVVGTPNYMCPEILAAMPYGYKSDIWSLGCCMFEIAAHQPPFRAPDRAGLINKINRGTISPLPIVYSSTLKQLIKSMLRKNPEHRPTAAELLRHSHLQPFVLRCRNASSVFLPVHLISCNSKDKTKKSDGPSGGEDHRDNVAGLVNHLERVYSIEGNGDVQTSNWRNDCKLAVSTSTEDNLETKMVDPFSFSVEFFTSVDKPEHSCKSIISSVDSNFNDKDGSMDEIMSNSTLDSVHKEQGFGAEYFHKSDAIDMKAVTTKVEGTFSNEGFDKAEAQREDCKPENYSKSIISSEHSKNNDKAVSIDEILSKSTLDFLHLEQELAAIYQKSDAIDIDAVTTIVEGTYSNSGFDKDEVQRKDAKPEDSNKSKISSEDSNGNDKDVSTNEIISESLPDYVIEEQGFAAEHFQKSDAIDVDAVTTIVEGTFSNAGFDKAEEQRKDAKAKDFYKSIISSEDSNGNDKDVSTNEITSKSILAVHEELGFAAEHFQKSEAIDINAVTTKDEGFDKAEAQQKDAKPEDSYKSIISSEDTNGNDKYVSIDEITSKSTLDSVEEEQEFAAEHSHESDIFVINTITTKVEGTFSHEGFDIAGSQGENARPEDSNKSNISCEDRNVNDKDMSVDEMTSKSILYSVHEEKGNAAEHILKSEANDIDATNVEGGFSNTGWDDKAEAQRHDAKPDDSCKSIISREDINANDEDVSIDDITSKSTLDPVLEEQGFTAEHFQEFDIIDINAVTTKVEGSFCTEVFDKAESQGENTRPEVSRKSIVSSEDSSGNDKVGSFDEGRPSPIVHPVRVEQDPETGNCLKESEKPKAFSEDLDLNSLTSECNDTLQGKDEVRENTHTISCSMQKENDKANVIDKTPNDISLSRHVLVGGGDKTKRRVDISCQQRADALESLLELCAQLLKQGKLEELAAVLRPFGEDVVSSRETAIWLTKSLISSQKINPET* 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2249 1115 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 896 950 - -
Lja5g2249 1115 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 576 665 - -
Lja5g2249 1115 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 4 365 - -
Lja5g2249 1115 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 951 1099 - -
Lja5g2249 1115 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 737 819 - -
Lja5g2249 1115 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 414 490 - -
Lja5g2249 1115 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 367 422 - -
Lja5g2249 1115 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 473 583 - -
Lja5g2249 1115 Gene3D Phosphorylase Kinase; domain 1 1 88 - -
Lja5g2249 1115 MobiDBLite consensus disorder prediction 917 978 - -
Lja5g2249 1115 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 951 1099 - -
Lja5g2249 1115 MobiDBLite consensus disorder prediction 926 942 - -
Lja5g2249 1115 ProSiteProfiles Protein kinase domain profile. 9 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2249 1115 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 812 897 - -
Lja5g2249 1115 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 737 819 - -
Lja5g2249 1115 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 414 490 - -
Lja5g2249 1115 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 367 422 - -
Lja5g2249 1115 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 473 583 - -
Lja5g2249 1115 Pfam Protein kinase domain 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2249 1115 MobiDBLite consensus disorder prediction 828 848 - -
Lja5g2249 1115 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 812 897 - -
Lja5g2249 1115 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 655 734 - -
Lja5g2249 1115 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 4 365 - -
Lja5g2249 1115 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 576 665 - -
Lja5g2249 1115 MobiDBLite consensus disorder prediction 515 551 - -
Lja5g2249 1115 SMART serkin_6 9 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2249 1115 SUPERFAMILY Protein kinase-like (PK-like) 6 288 IPR011009 -
Lja5g2249 1115 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Lja5g2249 1115 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 655 734 - -
Lja5g2249 1115 CDD STKc_Nek 8 263 - -
Lja5g2249 1115 Gene3D Transferase(Phosphotransferase) domain 1 89 274 - -
Lja5g2249 1115 MobiDBLite consensus disorder prediction 673 695 - -
Lja5g2249 1115 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 896 950 - -
Lja5g2249 1115 MobiDBLite consensus disorder prediction 673 690 - -
Lja5g2249 1115 MobiDBLite consensus disorder prediction 518 547 - -
Lja5g2249 1115 MobiDBLite consensus disorder prediction 834 848 - -
Lja5g2249 1115 MobiDBLite consensus disorder prediction 754 778 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2249 Lja-Chr5 38462549 38478788 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2249 9 273 MAP Kinase Kinase Kinase AT3G13530 31.955 4.83e-34 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lja5g2249 Pkinase 1.2e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2249 K08857 - gmx:100818558 1088.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2249 5 38462549 38478788 Lja5g2249 5 38462549 38478788 ECH
Lja1g1263 1 13009693 13014703 Lja5g2249 5 38462549 38478788 PCT