Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2236 ATGAGTGGGAATATTACTCCCATAAGGAGTGTTTCTGCAGGAAAAAAATTTCTCAGAATTAAGACTTGGGTCTTACGGATGTGGGAAGTTTATCCTGTGAACCAACTAATGAGTTCATATGCTCTTAATGTTATTCTTATTGATGCTGAGGGACAAAAAATTGAGGCAATTGCTCGCAAGCAAAATATATCCAAGTTCAAGGCTGAGCTTCAGGAGGGCAAGGTGTACAGAATATCGTACTTCTTAGTTGTCACCAACAATGGCAATTACATGGGTTCTGAGCATGAGTGTAAGATCATCTTCAATGAAAAAACAAAGGTTATTTTGGAAGAGGATACTGCGATACCAAAGAATGTATTCAACTTCAAGAACACTGCTGAAATTTTATCTACTGGTGGTGATTCGGACTATCTAATTGACATAATTGGATTAGTTACAAGCGTTTCAAGGGAGAAGAAATACACCAAAGCTGACCACGTAACGAGGATGATTGAGCTTGAGATTACGGATGACAAAGGCAAGATTAACTGTGCTTTGTTTGGAAACTATGTCGACATTGTTAAACAATATGTTGCAACCGATGGTAGTCATATGCCTGTTGTTGTTGTTCAATTTGCCAAGATAAAGACCTTCAAGGGTAGTGTTGTAATCCAGAATGTTATGAACGCTTCTTTGATTCTTTGGAACCCTCCGATAGCTGAAGCTGTCTCTTTCCGTAATGGATTGGCACTCCATGGCATTGAGGCTGATATGCCGTTAGCTATGTTGATTGATGATGATGATGATGATGAAGATGTTCATGTCATCACTTTGGAGGAGGAGTTTCTAACTCTATATCCTAGGAAGGGCATCAAAGATCTTAATGAGACGGAGGAGAATGGAGTGTTCATTGTTTTAGCACAGATTGGTGGTCTTCTTGACGGTGAGAAATGGTGGTACTCTGCATGCGGCTGCCACAGGGCAGTTACTACTGAGGATGGGATGATTTATTGCGGAGGTTGCCGCAGGACTGTGTTATCTGTAACTCCAAGGTTCAGGCTCAAATTAGAGGTGGATGATGGTGGGGATTCTGCCATATTTGTTATGTTTGACACTGACTCCCAGCAACTATTGGGCAAAACATGCAAGGAACTTGTCGTGACATCCAAGGGGAAATATTCACATGAGTATCCGCATGAAATCCGCTCCATTGTTGGTACAGAATTACTATTCAAGGTTGAAAAGTCTCCTGATCATGGGACCAAGTTTGATGAGTCTTTTAAGATTAAGAAAATATGTGCTGACAGAGCTGTGATTGAGGCATTCAAGGATGAGTCTAAGATACAAACTCCTCACAAGAGAGATATAGGTTTTACGCGAATGAAAAATAGGTCAATTGCATATACATTGCTAACTTTGTTGATTGTCACTTCAGATGGTAATTTTTTTGACACACGCGATTCACATCTTGCTGGCAGCTATTGCTTCTTTTTTCCCCCAACAGGCACATCTTTGCCAGCTGTACTTTGTGATGAGTGCAACGAGTTCATTGTGAATAATAATCCTCACTTGGTTCCTATTGAGGATTAA 1569 0.4041 MSGNITPIRSVSAGKKFLRIKTWVLRMWEVYPVNQLMSSYALNVILIDAEGQKIEAIARKQNISKFKAELQEGKVYRISYFLVVTNNGNYMGSEHECKIIFNEKTKVILEEDTAIPKNVFNFKNTAEILSTGGDSDYLIDIIGLVTSVSREKKYTKADHVTRMIELEITDDKGKINCALFGNYVDIVKQYVATDGSHMPVVVVQFAKIKTFKGSVVIQNVMNASLILWNPPIAEAVSFRNGLALHGIEADMPLAMLIDDDDDDEDVHVITLEEEFLTLYPRKGIKDLNETEENGVFIVLAQIGGLLDGEKWWYSACGCHRAVTTEDGMIYCGGCRRTVLSVTPRFRLKLEVDDGGDSAIFVMFDTDSQQLLGKTCKELVVTSKGKYSHEYPHEIRSIVGTELLFKVEKSPDHGTKFDESFKIKKICADRAVIEAFKDESKIQTPHKRDIGFTRMKNRSIAYTLLTLLIVTSDGNFFDTRDSHLAGSYCFFFPPTGTSLPAVLCDECNEFIVNNNPHLVPIED* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2236 522 CDD RPA1_DBD_B_like 140 239 - -
Lja5g2236 522 Gene3D - 113 249 IPR012340 -
Lja5g2236 522 CDD RPA1_DBD_A_like 19 107 - -
Lja5g2236 522 Pfam Domain of unknown function DUF223 44 113 IPR003871 -
Lja5g2236 522 SUPERFAMILY Nucleic acid-binding proteins 4 112 IPR012340 -
Lja5g2236 522 Gene3D - 4 112 IPR012340 -
Lja5g2236 522 SUPERFAMILY Nucleic acid-binding proteins 120 246 IPR012340 -
Lja5g2236 522 PANTHER REPLICATION FACTOR A 1, RFA1 24 379 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lja5g2236 522 SUPERFAMILY Nucleic acid-binding proteins 279 410 IPR012340 -
Lja5g2236 522 Gene3D - 273 427 IPR012340 -
Lja5g2236 522 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 24 379 - -
Lja5g2236 522 CDD RPA1_DBD_C 284 406 IPR013955 -
Lja5g2236 522 Pfam Replication factor-A C terminal domain 306 409 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2236 Lja-Chr5 37928326 37933510 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2236 42 407 Core DNA Replication Machinery Family AT4G19130 23.454 2.53e-18 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2236 - - lja:Lj6g3v0884310.1 480.33