Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2234 ATGCTTGAACAGGAGGGTTGGCATCTTAGATTGCCATTCTTGCTTTGGATCATCATTGGCTTGTTGATACATTATGTTGTGAAAGCTGAGATTCCATTGGGTTCCAAACTTTCTGGATATGACAATGATCACTGGGCTTCCTCCAATGGTGATTTTGCAGTTGGATTCTTCAGCACTTCAGATCAACTTAACTACACATTCTTCCACTCTCTAGGTACTATCCCTTCCTTCAATGTTCATTCCCAGAACAGAAATCTTGTGTTAATGGATAGGGAGAAAAACATGATTTGGCGGAGTTTGGATACTCCATCTGATACACTTCTTCCAGGACAAAGTTTACATGTCAATTATATACTTAGAGCTGCATCCAAGAATCACAAGTCCAGTTACTATAGTCTTCACATGAATGCTTCAGGTCATTCTGCTTCAAATATCAGTGCTATTCTTACAACCAGTGGAGCTCTGGAACTTCGAGACCAACGTTTGAAGCCTATTTGGTCTGTGTTTGGAGATGATCACAATGATTCTGTGAGTTACAGATATCTTAGGTGTAACACCCCGATTTCGGTGGCGTCTTCGCAAGCGGTTGAGAATCAACGTAAGGTCTGCAGATCAGTCTGGCAAGCGGTTGAGAATCAATGTAAGGTCTTCGCAACTTGTGGTCAACTTGGTATTTGTGGCTTCAATGCCTCGGGTTCTGCTGATTGTAGATGCCCCTTTGAAGTAACCGGGACTAACAGTTTACCCCCTGATGATTCTGTCATCACAAGTAGTTTGAAGCAATGTGAAGAGATGTGTCTGAATGACTCACGGTGTACGGCTGCAACCTTTTCCAATAATGGGACTCCACAATGCTCAATAAAGAAAACTAGTTATGTGAGTGGCTATGCAGATCCATATGTAAGCTCAATATCATTTGTTAAGAGATGTTCTGGTCCATTCGCTGTAAACCCTAATCTTACCAAATCGCCTCCATTAGAACCACCTCCTAGGCTCTGTGTTCCTTGTCTAATTGGAGCCGGATTAGGCACATTTTTCTTGTTTGTTGCTCTCCAGTTAGAACTGTGCCTCACTGGGGATTTCAAGAACCAAATTGGGCCAAAGGTGTTCAAGGGTTTGCTACCAAACAATCACCTGATTTCAGTTAAAGACCTAAATGCTTCTACAGAAGAAAGGAAGTTTCGTGGCGTTGTTCTAAAGATGGGTAGCATCCACCACAAGAATCTTCTGAAGCTGGAGCGTTATTGTTGTGAGTGTGATCATAGATTTTTGGTGTATGAATATGCAAAAAACGGTTCACTGGACAAGTACAGAGTTGAAATATGCTCAAGCGTGGCGAAGGCCATTTGTTACTTGCACTCTGGGTGTAGGGAGTTCATAAGCCATGAAAACCTGAAATGCGAAAATGTAATGTTGACTGAGAACTTAGAAGCAAAAGTGAGTGAATTTGGTTTTGCTATAGTAGATGGTAAGGCAACACATTGTGGCTTTTCTGCTGAGAAAGATGTAGAGGATTTTGGCAAGTTGGTTTTAACTTTGTTAACCGGGTGTCACCGCTACGATCTCACGGAACTGTGCGAGTGGGCATATAAAGAATGGATGGAAAAGAGGGCAGGTAATGTGGTTGATGAAAGAATAGTAAGGGGTTGCGATTCAAAGGAGCTTGAGCGTACATTAAGAATTGCATTTTGGTGCCTTCAAAGGGATGAACGAAGGAGACCTTCCATGGGGGAGGTATTAAGAGTTCTTGATGGTACATTGAATGTTGATCCTCCACCACCAGGGCCGTGGGGGCCTTTAGGTGAAAAAGGCGGTTGCCTAAGGCCCCCAAAAATAAAACTTCTTTTTAGGCTTATTTTTTTTTAG 1866 0.4239 MLEQEGWHLRLPFLLWIIIGLLIHYVVKAEIPLGSKLSGYDNDHWASSNGDFAVGFFSTSDQLNYTFFHSLGTIPSFNVHSQNRNLVLMDREKNMIWRSLDTPSDTLLPGQSLHVNYILRAASKNHKSSYYSLHMNASGHSASNISAILTTSGALELRDQRLKPIWSVFGDDHNDSVSYRYLRCNTPISVASSQAVENQRKVCRSVWQAVENQCKVFATCGQLGICGFNASGSADCRCPFEVTGTNSLPPDDSVITSSLKQCEEMCLNDSRCTAATFSNNGTPQCSIKKTSYVSGYADPYVSSISFVKRCSGPFAVNPNLTKSPPLEPPPRLCVPCLIGAGLGTFFLFVALQLELCLTGDFKNQIGPKVFKGLLPNNHLISVKDLNASTEERKFRGVVLKMGSIHHKNLLKLERYCCECDHRFLVYEYAKNGSLDKYRVEICSSVAKAICYLHSGCREFISHENLKCENVMLTENLEAKVSEFGFAIVDGKATHCGFSAEKDVEDFGKLVLTLLTGCHRYDLTELCEWAYKEWMEKRAGNVVDERIVRGCDSKELERTLRIAFWCLQRDERRRPSMGEVLRVLDGTLNVDPPPPGPWGPLGEKGGCLRPPKIKLLFRLIFF* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2234 621 ProSiteProfiles Protein kinase domain profile. 334 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2234 621 SUPERFAMILY Protein kinase-like (PK-like) 368 583 IPR011009 -
Lja5g2234 621 PANTHER OS07G0415500 PROTEIN 357 594 - -
Lja5g2234 621 SUPERFAMILY alpha-D-mannose-specific plant lectins 85 123 IPR036426 -
Lja5g2234 621 Pfam Protein kinase domain 369 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2234 621 Gene3D Phosphorylase Kinase; domain 1 359 428 - -
Lja5g2234 621 ProSiteProfiles PAN/Apple domain profile. 238 310 IPR003609 -
Lja5g2234 621 Gene3D Transferase(Phosphotransferase) domain 1 492 591 - -
Lja5g2234 621 Gene3D Transferase(Phosphotransferase) domain 1 429 491 - -
Lja5g2234 621 Gene3D - 25 170 IPR036426 -
Lja5g2234 621 PANTHER OS07G0415500 PROTEIN 81 245 - -
Lja5g2234 621 PANTHER OS07G0415500 PROTEIN 7 64 - -
Lja5g2234 621 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD3-1 357 594 - -
Lja5g2234 621 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD3-1 7 64 - -
Lja5g2234 621 PANTHER OS07G0415500 PROTEIN 249 355 - -
Lja5g2234 621 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD3-1 81 245 - -
Lja5g2234 621 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD3-1 249 355 - -
Lja5g2234 621 SMART ntp_6 235 309 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2234 Lja-Chr5 37861247 37884250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2234 358 596 Receptor kinase-like Gene Family AT4G23140 29.252 2.68e-30 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja5g2234 Pkinase 1.4e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2234 - - gmx:100812107 793.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2234 5 37861247 37884250 Lja5g2234 5 37861247 37884250 ECH