Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2230 ATGAGTTCATCATCTTCCACTTTTCTTCTCTACACGTTTTCTTTACCAAGGTATTGTAAGCTTCACCTTGATGGGGCATGGGCGGTGGTTGATATTTCCTTGGACTATATGCGACCTGGTGCTGCCTCAAAATGCAGAAGGCAACCCTCTGGTTGTATGATTCAAGAATTGACAAATGGTTTCTCAAAGGTTACATGGATTGAGCATGTAGAAGTTGAAGACAATGTGATGCATGATCTCTTCAAAAATCTAGTAAATTCTGGTTTTTCCTTTAGAGCTAGACGGTGGATAGGAACTTTAGAAAGACAGTGCAAACGTATTGCTTGCACAATAGCATCAAACATACCACCAGATGACCATAGTGGAAGAAAAGGCTTGATGAAATTGGCAGAGAAAATTATGCAAAGCTATTGCAACTATGTTGGTGCTTCCCCACCACCACCATATATTTGGATAGTCCACACAACACCACCAACTGGTGCTAATGATGTGCGAGTCACGACCAGAAACCACACTAATGCATCAGGTGCAATTATTGGTCTATTTATCAGTGCTGCAACTTCTTTCTCGCTTAAAGTTCCTTTCAAGAGCCTCTTTGATTTTCTTCGTAATGTGAACTCAAGAAACCAGTGGGATATTCAGACCAACGGTTTTCTAGTTCAAGAACTAGCACACATAACGAGTGGCCATGCTCCTAGTAACTTCGTCTCTTTACTTCAAACAAATAGTTGTACTACACGATCAAAACTTGATCTTACATCTACAGGATCATACGTGGTGTATTCTCCTATTGAAATTGATACCCTGAATTTAGTCTTGAGTGGCTTTAATCCAGATAATGGTACTATGCAACCTTCTGGCTTTGCCATTCTTTCTGATGGGCTTGGGCTGAGTGGTGGGTCTGTAACTGATGTTGCATCTGGAGGATGTGTATGCACATTTGGATATGACAGATTGATTAAAGAAAATACACCAGAGCTGCCTCCTGGCATAGTAATCTCTTTGTGCAATTTTATGAAGTGCAGAATTGAAAAAATCCAAGCTACAATGATGTGCGTGAGCACCTGA 1068 0.4073 MSSSSSTFLLYTFSLPRYCKLHLDGAWAVVDISLDYMRPGAASKCRRQPSGCMIQELTNGFSKVTWIEHVEVEDNVMHDLFKNLVNSGFSFRARRWIGTLERQCKRIACTIASNIPPDDHSGRKGLMKLAEKIMQSYCNYVGASPPPPYIWIVHTTPPTGANDVRVTTRNHTNASGAIIGLFISAATSFSLKVPFKSLFDFLRNVNSRNQWDIQTNGFLVQELAHITSGHAPSNFVSLLQTNSCTTRSKLDLTSTGSYVVYSPIEIDTLNLVLSGFNPDNGTMQPSGFAILSDGLGLSGGSVTDVASGGCVCTFGYDRLIKENTPELPPGIVISLCNFMKCRIEKIQATMMCVST* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2230 355 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 17 351 IPR042160 -
Lja5g2230 355 ProSiteProfiles START domain profile. 1 109 IPR002913 GO:0008289
Lja5g2230 355 SUPERFAMILY Bet v1-like 122 296 - -
Lja5g2230 355 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 17 351 - -
Lja5g2230 355 SUPERFAMILY Bet v1-like 17 106 - -
Lja5g2230 355 Pfam START domain 17 106 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2230 Lja-Chr5 37613969 37629045 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2230 17 352 Homeobox Transcription Factor Family AT4G04890 46.667 2.28e-101 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2230 K09338 - lja:Lj5g3v0802980.1 353.214