Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2227 ATGGGTAATTGTTGCATAACCCCAGCGGGTTTCAACAAGGGGAAGAAGAAGGAGAAGAAAAAGAATCTTCCGCCGCCGGTGGTGGTTCTGAAGGAGCCGACGGGGAGGGAGATAGGAGTTCGCTACGAATTGGGGAGGGAATTAGGGAGAGGGGAATTCGGCACAACGTTCCTGTGCAAGGACAAGGAAACAGGGGAGGAGTATGCATGCAAGACAATTTCCAAGGAGAAGCTCAGGACCGCCATTGATTTGGAAGATGTCAGGAGGGAGGTGGCGATCATGCGCCACCTTCCTAAACACCCCAACGTCGTCACATTGAAGGACACCTATGAGGACGACGGCGCCGTTCACCTCGTCATGGAGCTCTGCGAGGGCGGCGAGCTTTTCGACCGCATCGTCGCCCGCGGCCACTATACCGAACGGGCCGCCGCACTTGTCACCAGAACCATCCTCCAAATTGTCCAGATGTGCCACAAAGAGGGTGTGATACACCGGGATCTCAAACCTGAGAACTTTTTGTTTTCAGACAAGAAGGAAACGGCAACTCTGAAGGCTATTGACTTTGGTTTGTCTGTTTTCTTTAAACCAGGTCAAAGATTTGATGAGATAGTTGGAAGCCCATATTACATGGCTCCTGAGGTTTTAAAGCGAAATTATGGCCCTGAAGTAGATATCTGGAGTGCTGGTGTAATTCTGTACATTTTATTGTGCGGTGTCCCGCCGTTTTGGGCAGAAACTGAACAGGGAGTTGCTCAAGCTATCATACGATCTGTTGTTGATTTTAAAAGGGAGCCATGGCCTAAGGTTTCTGATAATGCGAAAGACCTTGTGAGGAAGATGCTTGATCCTGATCCAAAGCGTCGGCTGTCTGCGCAAGAAGTGTTAGATCATCCATGGTTGCAGAATGCACAGAAAGCTCCTAATGTTTCATTGGGAGAAGCTGTCAGAGCAAGGCTCCTGCAATTTTCTGTGATGAACAAGCTGAAGAAAAGAGCACTGAGGGTGATTGCAGAGCATTTGTCAGTAGAAGAAGTCGCTGGAATAAAAGAGGGATTCCAGGTGATGGATACAGGGAATAGAGGAAAGATTAACTATGATGAGCTACGAGTCGGTTTGACTAAACTAGGTCACCAAGTTCCTGATGGCGATGTCCAAATACTTATGGACGCTGCTGATGTGGACAAAGATGGGTTCCTAGATTATGGAGAGTTTGTAGCCATTTCTATTCATTTGAGAAAGATAGACAACGACCAGCACCTTCACAAAGCCTTCCAGTTTTTTGATCAGAACCAAAGTGGATTTATTGAAATTGAGGAGTTGGGAAATGCCTTAGCTGATGAGGTCGACACAAACCATGAAGAAGTCATTAATGCAATTATGCATGATGTAGACACAGATAAGGATGGAAGAATAAGTTATGACGAATTTGCTGCAATGATGAAGGCTGGGACAGATTGGAGAAAAGCATCAAGACAGTACTCGCGAGAGAGGTTTAACAGTCTAAGCCTGAAACTAATGAAGGACGGGGCATTGCAAATAAACAACAAAGAAGGGTAG 1557 0.4663 MGNCCITPAGFNKGKKKEKKKNLPPPVVVLKEPTGREIGVRYELGRELGRGEFGTTFLCKDKETGEEYACKTISKEKLRTAIDLEDVRREVAIMRHLPKHPNVVTLKDTYEDDGAVHLVMELCEGGELFDRIVARGHYTERAAALVTRTILQIVQMCHKEGVIHRDLKPENFLFSDKKETATLKAIDFGLSVFFKPGQRFDEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVVDFKREPWPKVSDNAKDLVRKMLDPDPKRRLSAQEVLDHPWLQNAQKAPNVSLGEAVRARLLQFSVMNKLKKRALRVIAEHLSVEEVAGIKEGFQVMDTGNRGKINYDELRVGLTKLGHQVPDGDVQILMDAADVDKDGFLDYGEFVAISIHLRKIDNDQHLHKAFQFFDQNQSGFIEIEELGNALADEVDTNHEEVINAIMHDVDTDKDGRISYDEFAAMMKAGTDWRKASRQYSRERFNSLSLKLMKDGALQINNKEG* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2227 518 ProSiteProfiles Protein kinase domain profile. 42 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2227 518 Gene3D Phosphorylase Kinase; domain 1 44 127 - -
Lja5g2227 518 CDD STKc_CAMK 41 299 - -
Lja5g2227 518 SUPERFAMILY Protein kinase-like (PK-like) 41 308 IPR011009 -
Lja5g2227 518 SMART efh_1 455 483 IPR002048 GO:0005509
Lja5g2227 518 SMART efh_1 419 447 IPR002048 GO:0005509
Lja5g2227 518 SMART efh_1 347 375 IPR002048 GO:0005509
Lja5g2227 518 SMART efh_1 383 411 IPR002048 GO:0005509
Lja5g2227 518 ProSiteProfiles EF-hand calcium-binding domain profile. 379 414 IPR002048 GO:0005509
Lja5g2227 518 ProSiteProfiles EF-hand calcium-binding domain profile. 451 486 IPR002048 GO:0005509
Lja5g2227 518 ProSiteProfiles EF-hand calcium-binding domain profile. 343 378 IPR002048 GO:0005509
Lja5g2227 518 ProSitePatterns EF-hand calcium-binding domain. 464 476 IPR018247 -
Lja5g2227 518 Pfam Protein kinase domain 42 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2227 518 SUPERFAMILY EF-hand 329 507 IPR011992 -
Lja5g2227 518 Gene3D - 309 483 - -
Lja5g2227 518 Gene3D Transferase(Phosphotransferase) domain 1 128 308 - -
Lja5g2227 518 Pfam EF-hand domain pair 361 406 IPR002048 GO:0005509
Lja5g2227 518 ProSitePatterns EF-hand calcium-binding domain. 428 440 IPR018247 -
Lja5g2227 518 PANTHER SERINE/THREONINE-PROTEIN KINASE 27 497 - -
Lja5g2227 518 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 32-LIKE 27 497 - -
Lja5g2227 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Lja5g2227 518 Pfam EF-hand domain pair 418 481 IPR002048 GO:0005509
Lja5g2227 518 ProSitePatterns EF-hand calcium-binding domain. 392 404 IPR018247 -
Lja5g2227 518 SMART serkin_6 42 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2227 518 ProSiteProfiles EF-hand calcium-binding domain profile. 415 450 IPR002048 GO:0005509
Lja5g2227 518 ProSitePatterns Protein kinases ATP-binding region signature. 48 71 IPR017441 GO:0005524
Lja5g2227 518 CDD EFh 419 481 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2227 Lja-Chr5 37487841 37492546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2227 1 513 EF-hand Containing Proteins AT5G19450 74.906 0.0 836
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lja5g2227 Pkinase 2e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2227 K13412 - gmx:100778471 865.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2227 5 37487841 37492546 Lja5g2227 5 37487841 37492546 ECH
Lja1g1286 1 13352242 13356929 Lja5g2227 5 37487841 37492546 PCT