Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2224 ATGGGTACTCCGGAATTCCCAGATCTTGGAAAGCACTGTGCTGTCTCTGATTGCAAGCTCGTTGATTTCTTACCCTTCACTTGCGATCGTTGCAACCAGGTGTATTGTTTGGAGCACCGAAGCTATATTAGACACCAGTGCACAAAAGCTGATAAGCTAGATCTCACTGTAGTGATATGTCCACTTTGTGCCAAAGGGGTTCGCCTAGTTCCTGATCAAGATCCGAATATAACTTGGGAGAATCATGTTAACACCGATTGCGACCCGTCAAATTATGAGAAAGTCACAAAGAAGAAAAAATGCCCTGCCGCTGGATGCAAGGAGATCTTAGTATTCTCAAACACAATTAAGTGCAGGGACTGCATGTTAGACCATTGTCTGAAGCATCGGTTCGGACCTGATCATAAATGTCCGGGGCCCAAAAAATTGGAAACAAGTTTCCCGTTTCTGAGTCTTTTGAACAAGAATAGAAAAGAGGAACGGAAACCCAATTCAAGTTCAACCCCCTCATCATCTAAATGGTCTTCAAGCTTTCTTAATGCAGCTTCTAACATTCGAGCTTCAGCTGAGGCTGGCATGTCAAAATTGAGTGGTGAAATTAACCAAGTATGGCAGACAACAAAGGATGGAGTGGGACAGAACAGTGGCAGTGAACACGTAGAGCAATGCCCTCAGTGTGGTGCCAAGTTTTCCTCAGTCACTACTTTGGTGGAGCATGTACAAAAGGTTCATGAAAGAAGTGGCAACCAATCTGGAGTGAGGGTTGCAATTGATGTTTGTCCTAAGTGCAGTAAAGGATTTCGAGACCCTGTGTCTCTTGTGGAGCATGTTGAGAGGGATCATGGTGGTAGTTCAAGAGCCTAG 864 0.4468 MGTPEFPDLGKHCAVSDCKLVDFLPFTCDRCNQVYCLEHRSYIRHQCTKADKLDLTVVICPLCAKGVRLVPDQDPNITWENHVNTDCDPSNYEKVTKKKKCPAAGCKEILVFSNTIKCRDCMLDHCLKHRFGPDHKCPGPKKLETSFPFLSLLNKNRKEERKPNSSSTPSSSKWSSSFLNAASNIRASAEAGMSKLSGEINQVWQTTKDGVGQNSGSEHVEQCPQCGAKFSSVTTLVEHVQKVHERSGNQSGVRVAIDVCPKCSKGFRDPVSLVEHVERDHGGSSRA* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2224 287 SMART c2h2final6 258 281 IPR013087 -
Lja5g2224 287 SMART c2h2final6 221 244 IPR013087 -
Lja5g2224 287 SUPERFAMILY AN1-like Zinc finger 57 143 IPR035896 -
Lja5g2224 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 221 249 IPR013087 -
Lja5g2224 287 SUPERFAMILY beta-beta-alpha zinc fingers 222 277 IPR036236 -
Lja5g2224 287 Pfam C2H2-type zinc finger 222 244 - -
Lja5g2224 287 Gene3D - 86 173 IPR035896 -
Lja5g2224 287 Gene3D - 2 56 IPR035896 -
Lja5g2224 287 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 287 - -
Lja5g2224 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 258 286 IPR013087 -
Lja5g2224 287 ProSitePatterns Zinc finger C2H2 type domain signature. 223 244 IPR013087 -
Lja5g2224 287 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Lja5g2224 287 Pfam Zinc finger, C2H2 type 259 281 IPR013087 -
Lja5g2224 287 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Lja5g2224 287 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Lja5g2224 287 ProSitePatterns Zinc finger C2H2 type domain signature. 260 281 IPR013087 -
Lja5g2224 287 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Lja5g2224 287 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Lja5g2224 287 Gene3D Classic Zinc Finger 197 284 - -
Lja5g2224 287 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Lja5g2224 287 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 287 - -
Lja5g2224 287 SUPERFAMILY AN1-like Zinc finger 6 50 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2224 Lja-Chr5 37144980 37147064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2224 1 287 C2H2 Transcription Factor Family AT2G41835 63.194 3.84e-125 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja5g2224 zf-AN1 4.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2224 - - gmx:100786272 499.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2224 5 37144980 37147064 Lja5g2224 5 37144980 37147064 ECH
Lja1g1289 1 13391086 13393158 Lja5g2224 5 37144980 37147064 PCT