Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2223 ATGGTGTTTATTAAGGCTCAGAAACCTAGGGCTTACTTCAAGAGATTTCAAGTCAAGTTTAAGAGAAGAAGAGAGGGAAAGACCGATTACAGAGCCCGAATTCGGTTGATCAATCAGGACAAGAACAAGTACAATACTGCAAAATACCGCTTTGTTGTTCGATCTACGAACAAGGATATTATTGCACAAATAATATCTTCTACCATTGCTGGTGATATTGTTCTTGCTGCAGCTTATTCACATGAACTTCCACGCTATGGTCTTGAAGTAGGCCTTACAAATTATGCTGCAGCTTATTGCACTGGACTCCTATTGGCCCGTCGAGTCCTTAAAACACTTGAAATGGATGAGGAATATGAGGGCAATGTTGAGGCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGACCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTATCAAGACCACAACTGGCAACCGTGTCTTCGGTGCCCTTAAGGGAGCTCTAGATGGTGGTCTGGATATTCCTCACAGTGACAAGAGGTTTGCTGGTTTTGATAAGGAGAAGAAGGAGCTGGATGCTGAGGTTCACCGCAAATATGTCTTTGGTGGACATGTTGCTGCCTATATGAAGACTCTGATTGAAGATGAGCCAGAGAAATACCAGTCTCACTTTAGTGAATATATCAAGCGAGGAATAGAAGCTGATGGACTTGAGGAGCTGTATAAGAAGGTCCATGCTGCAATTCGTGCAGATCCCACTTCAAAGAAATCTGAGAAGCCGCAACCTAAGGAGCATAAGAGGTACAACCTCAAAAAGCTTACTTATGATGAGAGGAAGAATAAGTTGATTGCACGCTTGCAAGCCCTCAACTCTGCTGCTGATGATCAAGAAGATGATGAGGATGATGAGTGA 906 0.4382 MVFIKAQKPRAYFKRFQVKFKRRREGKTDYRARIRLINQDKNKYNTAKYRFVVRSTNKDIIAQIISSTIAGDIVLAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKTLEMDEEYEGNVEATGEDYSVEPAETRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKEKKELDAEVHRKYVFGGHVAAYMKTLIEDEPEKYQSHFSEYIKRGIEADGLEELYKKVHAAIRADPTSKKSEKPQPKEHKRYNLKKLTYDERKNKLIARLQALNSAADDQEDDEDDE* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2223 301 Pfam Ribosomal L18 C-terminal region 235 288 IPR025607 -
Lja5g2223 301 Hamap 50S ribosomal protein L18 [rplR]. 14 246 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lja5g2223 301 PRINTS Ribosomal protein L5 signature 206 226 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lja5g2223 301 PRINTS Ribosomal protein L5 signature 20 39 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lja5g2223 301 PRINTS Ribosomal protein L5 signature 84 104 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lja5g2223 301 PRINTS Ribosomal protein L5 signature 164 183 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lja5g2223 301 PRINTS Ribosomal protein L5 signature 43 62 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lja5g2223 301 PRINTS Ribosomal protein L5 signature 144 163 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lja5g2223 301 PANTHER RIBOSOMAL PROTEIN L5-RELATED 1 297 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lja5g2223 301 MobiDBLite consensus disorder prediction 248 269 - -
Lja5g2223 301 Coils Coil 277 297 - -
Lja5g2223 301 PANTHER - 1 297 - -
Lja5g2223 301 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 14 175 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lja5g2223 301 CDD Ribosomal_L18_L5e 31 170 - -
Lja5g2223 301 Gene3D - 1 291 - -
Lja5g2223 301 SUPERFAMILY Translational machinery components 11 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2223 Lja-Chr5 37113179 37117968 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2223 1 291 Cytoplasmic Ribosomal Protein Gene Family AT3G25520 80.412 1.32e-180 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2223 K02932 - gmx:100805868 517.309