Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2222 ATGGGACAAAAATTTTGGGTTGCTTTTGTACTTTCTATGAGCGGAATGTTCTTCATGATTTACTTTTGCTATTCTTGTTATGAATTCCGTCGTCATCTCAGTCGTCTTCCGAAGCCTATCAAGGGGTTGTCCCCTTTGCAGTTGGATAAGCTTCCCAGAATCACCGGCAAAGATTTGGCCCGCACCACCGAATGTGTTGTGTGCCTTGACGATATTGAGAGCGAGCAGCCAGCTCGACTGCTCCCCGGTTGTAACCATGCTTTTCATCTCCAGTGTATTGACAAGTGGCTCTCCAAGAACTCGCATTGTCCGCTTTGTAAAGCCGACCTTAGATCCTTAATTTCTCAAGAAAGATGCTCCCAATGTCTTTGTTGA 375 0.456 MGQKFWVAFVLSMSGMFFMIYFCYSCYEFRRHLSRLPKPIKGLSPLQLDKLPRITGKDLARTTECVVCLDDIESEQPARLLPGCNHAFHLQCIDKWLSKNSHCPLCKADLRSLISQERCSQCLC* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2222 124 SMART ring_2 65 106 IPR001841 -
Lja5g2222 124 Pfam Ring finger domain 64 107 IPR001841 -
Lja5g2222 124 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 12 116 - -
Lja5g2222 124 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 12 116 - -
Lja5g2222 124 SUPERFAMILY RING/U-box 64 113 - -
Lja5g2222 124 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 114 IPR013083 -
Lja5g2222 124 ProSiteProfiles Zinc finger RING-type profile. 65 107 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2222 Lja-Chr5 37053375 37053749 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2222 1 116 C3H Transcription Factor Family AT5G42200 45.312 7.93e-30 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2222 K19037 - gmx:100776003 122.479