Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2209 ATGGGGAGGGGTAAGATTGAGATAAAGAAGATTGAGAATTTGAACAGCAGGCAGGTTACCTTCTCCAAGAGGCGTAATGGGTTGCTGAAGAAAGCCAGAGAGTTGTCTGTTTTGTGTGATGCAGAGGTTGCTGTCATCATATTCTCTAGCACCGGCAAGCTTTATAAGTTTTCAAATACAAGCATGGAGCATACTCTTTCAAGGTACGGCAGAGGCCAGGGATCGCATGGTGCAGAGCAACCTACTGATGAGCCCTCAACAAATGTTATGGTGCCTGATACAAACATTCTGAACGATCAAATAACACAGCTTCGTTCAGAAAACTTAAGGATGTTGGGTAAGGGGCTTGATGGATTGAGCTTTTCAGAACTGCATCAACTAGAAAATCAACTGACGGATGGGTTATGTGCTGTCAAAGACAAGAAGGATAAAATGCTTATAGAACAGCTCACGAGGTCCAGGTTACAGGAGGAAAAGGCATTGATGGAGAATGAAGCTCTGCGAAAACAACTTAAGGAGATTGAAAATAAAAGAAAGACACAGTTCCTTGAATTCACTTCGTTGGATAGGACGAATTCAATGAGCAGTTCAAAACCCCTTTTAGTTTGTGCTTCAGAGGATAACGAGATTTCAGATACTTCCTTGCAATTAGGATTATGGTCGCAAGAGGAAATCAGTGAAGACAGAACCTTGCAACGACTCAGGGAGTCAAGTGGCTTCACAGTGACATATTTATCCTGA 741 0.4251 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKARELSVLCDAEVAVIIFSSTGKLYKFSNTSMEHTLSRYGRGQGSHGAEQPTDEPSTNVMVPDTNILNDQITQLRSENLRMLGKGLDGLSFSELHQLENQLTDGLCAVKDKKDKMLIEQLTRSRLQEEKALMENEALRKQLKEIENKRKTQFLEFTSLDRTNSMSSSKPLLVCASEDNEISDTSLQLGLWSQEEISEDRTLQRLRESSGFTVTYLS* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2209 246 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja5g2209 246 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Lja5g2209 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja5g2209 246 Pfam K-box region 92 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja5g2209 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 225 - -
Lja5g2209 246 MobiDBLite consensus disorder prediction 66 89 - -
Lja5g2209 246 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Lja5g2209 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lja5g2209 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lja5g2209 246 PANTHER BNAC04G24260D PROTEIN 1 225 - -
Lja5g2209 246 Coils Coil 152 184 - -
Lja5g2209 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lja5g2209 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja5g2209 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja5g2209 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja5g2209 246 Gene3D - 14 89 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2209 Lja-Chr5 36285957 36289764 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2209 1 237 MADS-box Gene Family AT5G13790 46.964 1.50e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lja5g2209 K-box 1.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2209 - - gmx:100792278 317.775
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2209 5 36285957 36289764 Lja5g2209 5 36285957 36289764 ECH