LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja5g2208	ATGGCTAACTACGGGGGGGATCTCTATGCCATCTTCCAAAATCCACTACCTCCCACCAACACCGCACCACCTTGTTATAATGAGGCCAGTTTTTCTTTTCCCAATAGACTGCAAGATCCTACTGGGGTGATCTCTGTAACCAATTGCTTGTATCCTTTACTTCCACCACCTCCCAACACCAACACCATTCCACATTCCTTGGCCAGTTTCACTTTCAATGAATATAATGAGGGATTTTCTTTTCCCATCAACACCAACACCACACCACCTTCCTTGGCCAGTCTCAATATTGAAGAATATATTGCAGCATTTTATTTTCCCAGCAACACCAACACCGCACCATCTTCCTTGGCCAGTCTCAATTTCAATGAAGATATTGATGCATTTTATTTTCCCAATATGCTGGAACAACCTTTAATCATAACCGATGAGTATGCTGATGAGCTAGACCAAATGCTCGCACACCATTGTCGCACCACAACCAGTACTACCAATACTAGATGTAATAATGGTTTCATACTCAATCCCAATTCCCCTCCTGATCTTGCAGGACAAAGCCACCACCTTCCTCCTAATCCTGTGCTTCTTGCTCCTCCTTCCAAGGAACCGAGACAACATGTGCAGAAGCATCAGAAACAGGTTTATCAAGTTCAGGCATCCAGAGCATTAGCAAAAGAAAGAAAAAGCGAACAAAAGAAAAGGTTGTTCCATGAAGATAATAAACTCTCATCAGATTCGTGGGCATGTCGTAAGTATGGACAAAAATCCATGAAGGGTACTCCATATCCAAGAAAAAGCCAACAGGTGAAAACAGTGTTTCATGTCACAGAAGATAAATTGTCTTCTTTAGATTCATGGGCATGGCGTAAATACGGAAAAAAATCCATCAAGGGTACCCCATATCCAAGGAACTATTTTAAGTGTACCAGCTCCAAAAATTGCCCCGCTCTAAAAAGAGTTGAACAGAGTAACATTAAATCACACATGTTCATCGTCACTTACAAAGGAGAACACTCCCATCTCAAGCCCACTGAGAATGCCAAGAAACCCGCTGGTAATAATTGA	1065	0.4216	MANYGGDLYAIFQNPLPPTNTAPPCYNEASFSFPNRLQDPTGVISVTNCLYPLLPPPPNTNTIPHSLASFTFNEYNEGFSFPINTNTTPPSLASLNIEEYIAAFYFPSNTNTAPSSLASLNFNEDIDAFYFPNMLEQPLIITDEYADELDQMLAHHCRTTTSTTNTRCNNGFILNPNSPPDLAGQSHHLPPNPVLLAPPSKEPRQHVQKHQKQVYQVQASRALAKERKSEQKKRLFHEDNKLSSDSWACRKYGQKSMKGTPYPRKSQQVKTVFHVTEDKLSSLDSWAWRKYGKKSIKGTPYPRNYFKCTSSKNCPALKRVEQSNIKSHMFIVTYKGEHSHLKPTENAKKPAGNN*	355

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja5g2208	354	SMART	WRKY_cls	282	342	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lja5g2208	354	Gene3D	WRKY domain	227	266	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lja5g2208	354	PANTHER	WRKY TRANSCRIPTION FACTOR 27-RELATED	108	264	-	-
	Lja5g2208	354	PANTHER	WRKY TRANSCRIPTION FACTOR 27-RELATED	264	345	-	-
	Lja5g2208	354	SUPERFAMILY	WRKY DNA-binding domain	281	342	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lja5g2208	354	Gene3D	WRKY domain	267	344	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lja5g2208	354	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	108	264	IPR044810	GO:0003700
	Lja5g2208	354	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	264	345	IPR044810	GO:0003700
	Lja5g2208	354	ProSiteProfiles	WRKY domain profile.	284	343	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lja5g2208	354	Pfam	WRKY DNA -binding domain	284	340	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lja5g2208	354	ProSiteProfiles	WRKY domain profile.	238	264	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja5g2208	Lja-Chr5	36239826	36241749	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja5g2208	264	344	WRKY Transcription Factor Family	AT5G52830	62.963	2.25e-29	114

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Lja5g2208		WRKY	1.2e-22	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja5g2208	-		K13425	jre:109010840	144.436