Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2205 ATGCGCGGAGATTCCGCAAAAACAAATTTTCTGGCGAATTCCTATATGGAGGACATCTCAAAAATGAAAACAATGAGCGTAGACGATTGTATTCTTTCTCTTAGAAGGGACAAGAAGAAGGCTAAGTCCGCGAGTTATACTGGCATAAAAAGAAACTCCCAGAACAAATGGGAAGCAAGATTGAAAAATTCTAATGGAATGCCAGCTCTAGACTTGGGAGTATTTAATACTGAGGAGGAAGCTGCAAAAGCATATGATGTCGCAGTTACAAGATGGAGGGGCAGGAATTCCGATGATAATGTTGAGAATAATGTCCTCCTCAATGGGGTGTCTTCCATGACTGGTACAGAAAATCAAGGAGCACGAAATTGTGTTAGATATGGAGAAGATCTTATCTCAAGCAGTGTTTTTCAAGAAGGTATGAGTAAGATGAATGAAATTCCATGCCTTGATGATTTTGACACAAACCAATTTCTATCATTGTTGGAGGATCAAGAAATTGTTTTGACTGATAAACTGGACGAATTTTCTGCAAACATGGAGAGTGACAACGGATACTCCAAGGAAAGTGGAAGGGAAATATGA 585 0.3932 MRGDSAKTNFLANSYMEDISKMKTMSVDDCILSLRRDKKKAKSASYTGIKRNSQNKWEARLKNSNGMPALDLGVFNTEEEAAKAYDVAVTRWRGRNSDDNVENNVLLNGVSSMTGTENQGARNCVRYGEDLISSSVFQEGMSKMNEIPCLDDFDTNQFLSLLEDQEIVLTDKLDEFSANMESDNGYSKESGREI* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2205 194 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Lja5g2205 194 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 107 - -
Lja5g2205 194 SUPERFAMILY DNA-binding domain 46 100 IPR016177 GO:0003677
Lja5g2205 194 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Lja5g2205 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WRI1 3 107 - -
Lja5g2205 194 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2205 Lja-Chr5 36165355 36167566 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2205 3 104 AP2-EREBP Transcription Factor Family AT1G51190 40.000 7.08e-17 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja5g2205 AP2 0.00036 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2205 - K09284 lja:Lj0g3v0119889.1 204.527