Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2197 ATGGCTTCTTCCTCCTCATCTTATGGCGCTCCGCAACCAAAGCATGATGTTTTTCTCAACTTTAGAGGAGAAGATACCCGTCGCACTTTCACAAGCCATCTCTATGCTGCCTTGCGTCGGAATCAAATCCAAACGTTCATTGACGACGAGAAAATTAACAGAGGGGATACACTATCACCGACTCTTCTTTCAGCTATTGAAAGCTCAAAGATTTCCGTGACTATCTTCTCACAAAACTATGCTTCTTCTGCGTGGTGTTTGGATGAACTCGAGAAGATTATTGAATGTAAGGAGAAAAAACAACTCGTTGTGATACCTGTTTTCTATCACATCGATCCAGCACATGTGAGACACCAGAGGGGAAGTTATAAAGATGCATTTACCAAACATGAGGGGAATTTCAGCGGCAATCTAATCAAGGTACAAAAGTGGAGATCTTCTCTGCGTGAAGCAGCCAACTCAGCAGGATGGGATTCCTCAAATATTCGACTGGAGTCCGAACTAGTTGAAAAGATTGTGGAGGATATATTACAGAAATTGGGTCGTATGAGCCCGCATGTTCCAAAGGGGCTTGTTGGAATTGCACAACACATTGCAGCTGTGGAATCATTGTTGTGCACAGGGTCAACTGATGTACGTATTGTTGGAATTTGGGGCATGGGTGGTATAGGTAAGACAACCATTGCAGATGCTCTATGTGCAAAACTCTCTTCTCAATACGAGGGATACAACTTCGTCGCCAATGTTAGGGAAGAATGGAAAAATCATGGAGAGAATTATATGCGGAATAAACTTCTGTCTGGAATATTGGGGGATCCAAATTTGTATATTAGCACCCCTACTATGAGTTCCACTTTTATTGTAGAAAGGCTACAGCGGAAAAAGCTCCTCGTTGTTCTTGATGACGTGAGTGATTCAAAACAAATAGAATACCTTGTTGGAGAGAAATATTGGTTTGGACCTGGTAGCAGAATCATAGTGACAACCAGAAATAAAGACGTGTTTAGCCAAGGAGTTAGAGTATACCAAGTGAAGAAGTTGAATTTTCATGAAGCACTAGAGCTTTTTAGCTCGAATGCCTTTCAACAAGACCATCCAGTGAGGGAGTACACACACTTGTCAGAAAGGGTAGTAGAATATGCTAAGGGCATTCCTTTAGCTCTTAAAGTTCTGGGTTCATATCTTCATTCAAAACAGCCGAAAGAATGGGAAAGTGCATTGGAAAAACTGAAGAAAATTCCCAAAGCTGAAATTTATGATGTGCTAAGATTGAGTTATGATGGTTTAGACCCTGAAGAGCAGGACATATTCTTAGATATTGCATGCTGTTTGAAAGGAGAGACAAAAGGCCAGATAACAAGTTTATTAGATGGTTGTGGCCTTTCTACAGATCTTGGCATGAGAAGCCTTCAAGATAAGTCTCTTATAACTGTTTCTAAGGACCAAACCGTACAGATGAATGATTTGATACAAGAAATGGGTTGGCAAGTTGTTCGTGAAGAATCTGCAAAAGATCCTGGAAAACGAACTCGGCTGTGGGATCCTAAGGAAATTTATGATGTCCTCAAGAATAACAGAGGAACTGACAGCATTGAAAGCATAGCATTGGACATGTCTCAAATCAAACATGTGACATTAAACCCTCAAGCTTTTCACAGAATGTACAAGCTAAGGATGTTGAATTTTTACATGTCTTCACGGGAAAACATAAGCAATGTGCATATTTCCAGAGGCCTCGAATGTATGCCTGATGAATTATGTTATCTCCGATGGGACTGTTTTCCATTGGAATCCTTGCCACCATCATTCAGTGCAGAGAAGCTTGTTGAACTTGATCTAAAACATAGCCTCCTTGAAAAACTTTGGGATGGAGAGCAGGATCTTGTGAATTTGAAGTCATTAAACCTTTGTGGTTGCAACCGCTTGATTGAGCTCCCAGATTTCTCTAGCGCCCAAAAACTTGAAGAAGTACATCTTGATGATTGTACAAGTTTGTTGAGTGTACCTTCATCCATTTTGTCACTTGATAGTCTGTTTGCACTAAATCTGAGAGGATGTAATCAGCTTCGTTGCATTCAAAGTGAGAAGCAATCTCAATCTCTTCAGTGGCTTAATCTGAGAGGGTGCTCAAGACTTGTAAAGTACTCATTTTCTTCAGAGAAATTGGAGTACCTGAGCCTAGATGGGACGGGAATAAAAGAACTTCCCTCATTAGTTGGAAAGCTCAAGGGCTTTTCAAGCATGTCTCTTGATCATGGTGAAAGACTTCCACATCTTCCAAATACCATTGGTTTAGCTTGTTCTATTCTGCTTCTTGACTGCCCAAAATTTGAGAATTTACCTCCAACATTTGACAGCTCATTGTCCATCACAACTCTCTGTCTGGATAACTGTTCAAATTTGTCACAGCTTCCTGAAAACTTTGGCCTCTTGTCAAATTTAAATAAACTTTCATTAAGAGGAAGCAATATTGAGAACTTGCCCGGTAGCATCAAATATCTTTCACAATTAAGGACTCTCAATTTAAGCAACTGCAGGAGGCTTCGGTCCTTGCCGGAGCTCCCATTGTTGTTACAAGACTTGAATGCAAGTAACTGTGTTTCCCTGGAAGCAGTATCAAATTTAGGGATCACAATGTTGCAAGATTCTGTTGGCAGACTGAAAAAGAGCTCACTGCTCAGACAGATTCAAGAGGAAGAAAAGATATCCATTCGTAATGGTGACTATTTAGAAAGATTTGATTTTTCTAATTGCATAAGTTGGATCAGATTGCACGCAAGACTGTCATGGAGGAGGCACTGA 2802 0.4054 MASSSSSYGAPQPKHDVFLNFRGEDTRRTFTSHLYAALRRNQIQTFIDDEKINRGDTLSPTLLSAIESSKISVTIFSQNYASSAWCLDELEKIIECKEKKQLVVIPVFYHIDPAHVRHQRGSYKDAFTKHEGNFSGNLIKVQKWRSSLREAANSAGWDSSNIRLESELVEKIVEDILQKLGRMSPHVPKGLVGIAQHIAAVESLLCTGSTDVRIVGIWGMGGIGKTTIADALCAKLSSQYEGYNFVANVREEWKNHGENYMRNKLLSGILGDPNLYISTPTMSSTFIVERLQRKKLLVVLDDVSDSKQIEYLVGEKYWFGPGSRIIVTTRNKDVFSQGVRVYQVKKLNFHEALELFSSNAFQQDHPVREYTHLSERVVEYAKGIPLALKVLGSYLHSKQPKEWESALEKLKKIPKAEIYDVLRLSYDGLDPEEQDIFLDIACCLKGETKGQITSLLDGCGLSTDLGMRSLQDKSLITVSKDQTVQMNDLIQEMGWQVVREESAKDPGKRTRLWDPKEIYDVLKNNRGTDSIESIALDMSQIKHVTLNPQAFHRMYKLRMLNFYMSSRENISNVHISRGLECMPDELCYLRWDCFPLESLPPSFSAEKLVELDLKHSLLEKLWDGEQDLVNLKSLNLCGCNRLIELPDFSSAQKLEEVHLDDCTSLLSVPSSILSLDSLFALNLRGCNQLRCIQSEKQSQSLQWLNLRGCSRLVKYSFSSEKLEYLSLDGTGIKELPSLVGKLKGFSSMSLDHGERLPHLPNTIGLACSILLLDCPKFENLPPTFDSSLSITTLCLDNCSNLSQLPENFGLLSNLNKLSLRGSNIENLPGSIKYLSQLRTLNLSNCRRLRSLPELPLLLQDLNASNCVSLEAVSNLGITMLQDSVGRLKKSSLLRQIQEEEKISIRNGDYLERFDFSNCISWIRLHARLSWRRH* 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2197 933 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 10 872 - -
Lja5g2197 933 PRINTS Disease resistance protein signature 290 304 - -
Lja5g2197 933 PRINTS Disease resistance protein signature 832 848 - -
Lja5g2197 933 PRINTS Disease resistance protein signature 214 229 - -
Lja5g2197 933 PRINTS Disease resistance protein signature 381 395 - -
Lja5g2197 933 Gene3D - 12 181 IPR035897 -
Lja5g2197 933 Gene3D - 346 430 IPR042197 -
Lja5g2197 933 Pfam TIR domain 14 186 IPR000157 GO:0007165
Lja5g2197 933 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 157 IPR035897 -
Lja5g2197 933 Pfam Leucine Rich Repeat 607 626 IPR011713 -
Lja5g2197 933 Gene3D Ribonuclease Inhibitor 521 714 IPR032675 -
Lja5g2197 933 Gene3D Ribonuclease Inhibitor 715 926 IPR032675 -
Lja5g2197 933 ProSiteProfiles Leucine-rich repeat profile. 836 858 IPR001611 GO:0005515
Lja5g2197 933 SMART till_3 14 154 IPR000157 GO:0007165
Lja5g2197 933 Gene3D - 182 343 IPR027417 -
Lja5g2197 933 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 440 IPR027417 -
Lja5g2197 933 ProSiteProfiles TIR domain profile. 13 180 IPR000157 GO:0007165
Lja5g2197 933 Pfam NB-ARC domain 196 412 IPR002182 GO:0043531
Lja5g2197 933 SUPERFAMILY "Winged helix" DNA-binding domain 417 523 IPR036390 -
Lja5g2197 933 SUPERFAMILY L domain-like 536 877 - -
Lja5g2197 933 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 872 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2197 Lja-Chr5 35958479 35962104 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2197 9 847 WRKY Transcription Factor Family AT4G12020 34.346 2.19e-126 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2197 - - lja:Lj5g3v0875650.1 1826.22