Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2192 ATGGAAGTGGAGCAGGAAAATACCTCAGCAGAACCCACTGTAACAGCCTCTGATGTTTCATCTGATCATTCAGCTTTGCCCCTGCCAGTACAACCTGTTATTGTACCAGTTATTACTCCTTCTGTTGTACCCCCTCTTGCTCCTATTCCCTCAATTCCTCCCTCTCTGGGTATCCGCCCACTGGCACCGCTACCGCTACCGCGGGCACCGGTTATTCGGCCACCTGTGCCGCAAAATGGCGAGGTTGGATCTAGCGATTCTGATTCGGACCATGATGACGCGGACACCACCAGGATTAACAAGGGTACCGGGGAGTATGAGATATCTGAAGAGAGTAGACAGGTCAGGGAGCGGCAGGAAAAAGCGAAGCAGGAACTCTTGTTGAAGAGGCGTGCTGCCGCGCTTGCTGTTCCTACGAATGACATGGCTGTGCGAGCTCGTCTTCGCCACCTTGGTGAGCCGATCACTCTCTTTGGTGAGAGGGAGATGGAGAGACGAGACAGGTTGCGGATGATTATGGCAAAGCTGGATGCTGAAGGTCAGCTGGAAAAGTTGATGAAAGCTCATGAGGATGAGGAGGCTGCAGCTTCTGCTCCGAAAGATGAGGCTGAGGAAGAACTGCAGTATCCTTTTTACACTGAGGGGTCGAAATCTCTCCGGGATGCTAGAATTGATATTGCTAAATATTCTTTAGTGAGGGCAGCGTCACGTCTTCAACGTGCTCAGAGAAGAAGAGATGATCCGGATGAAGATCCGGATGCAGAGATGAAATGGGCATTGGAGCAGGCTGGGGATTTGAGGCTTGAATTTAGTGAAATTGGAGATGATCGTCCACTTACCGGTTGCTCATTCTCACGGGATGGAAAAAGGCTAGCTACCTGTTCTCTTACTGGAGCTTCCAAGTTATGGAGCATGCCTGAAATAAGAAAAACTTCTACCTTTAAGGGTCATACAGAGCGTGCCACTGATATTGCTTATTCTCCTGTGCATAATCACTTGGCAACTGCCTCGGCTGATCGGACTGCAAAGTATTGGAATGATCAGGGATCTCTTTTGAAGACATTTGAGGGTCATCTTGACCGTCTTGCACGCATTGCCTTCCATCCATCAGGGAAGTACCTAGGTACTGCTAGTTTTGACAAGACTTGGAGATTATGGGACATAGAAACAGGAGAGGAGTTGCTTCTTCAAGAAGGCCATAGTAGAAGTGTATATGGTTTAGCTTTCCACCATGATGGATCATTAGCTGCGTCATGTGGACTCGATTCTCTTGCTCGTGTTTGGGACCTGCGAACTGGGAGAAGTATTCTTGCTCTTGAAGGTCATGTCAAACCGATTCTTGGCATTAGTTTTTCACCTAATGGATATCATTTAGCCACGGGTGGTGAAGACAACACTTGTCGCATTTGGGATTTAAGGAAGAAGAAATCTTTGTACACCATTCCTGCTCACTCCAATTTAATATCCCAAGTTAAATTTGAGCCCCAAGAAGGTTACTTTTTGGTAACTGGCTCATATGACATGACAGCTAAGGTTTGGTCAGCCCGTGACTTTAAGCCTGTGAAAACACTATCTGGGCATGAAGCAAAAGTTACTTCTTTGGATGTTCTTGGAGGTTTCAGCACAAGGAAGGCAAGTACCAACAACTCAAGTCGTGGTAGCAATGGCCGATACAAAGGAGGTGGTGAAAACAGTCGTCCGGTCAACCCACCACCACTGTCAGAGCTGCCAGATTTTGACTCGCCAATGGAGGATGGTATGCCAGCAGTGATGATGTTTTTTTCTGTCACTGGTGCTGGCCAGATTTTCTATGCTGGAACTTACGAGTAG 1830 0.477 MEVEQENTSAEPTVTASDVSSDHSALPLPVQPVIVPVITPSVVPPLAPIPSIPPSLGIRPLAPLPLPRAPVIRPPVPQNGEVGSSDSDSDHDDADTTRINKGTGEYEISEESRQVRERQEKAKQELLLKRRAAALAVPTNDMAVRARLRHLGEPITLFGEREMERRDRLRMIMAKLDAEGQLEKLMKAHEDEEAAASAPKDEAEEELQYPFYTEGSKSLRDARIDIAKYSLVRAASRLQRAQRRRDDPDEDPDAEMKWALEQAGDLRLEFSEIGDDRPLTGCSFSRDGKRLATCSLTGASKLWSMPEIRKTSTFKGHTERATDIAYSPVHNHLATASADRTAKYWNDQGSLLKTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWDIETGEELLLQEGHSRSVYGLAFHHDGSLAASCGLDSLARVWDLRTGRSILALEGHVKPILGISFSPNGYHLATGGEDNTCRIWDLRKKKSLYTIPAHSNLISQVKFEPQEGYFLVTGSYDMTAKVWSARDFKPVKTLSGHEAKVTSLDVLGGFSTRKASTNNSSRGSNGRYKGGGENSRPVNPPPLSELPDFDSPMEDGMPAVMMFFSVTGAGQIFYAGTYE* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2192 609 Pfam pre-mRNA processing factor 4 (PRP4) like 144 170 IPR014906 -
Lja5g2192 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 314 346 - -
Lja5g2192 609 SUPERFAMILY WD40 repeat-like 268 536 IPR036322 GO:0005515
Lja5g2192 609 MobiDBLite consensus disorder prediction 542 558 - -
Lja5g2192 609 ProSitePatterns Trp-Asp (WD) repeats signature. 416 430 IPR019775 -
Lja5g2192 609 PRINTS G protein beta WD-40 repeat signature 501 515 IPR020472 -
Lja5g2192 609 PRINTS G protein beta WD-40 repeat signature 374 388 IPR020472 -
Lja5g2192 609 PRINTS G protein beta WD-40 repeat signature 458 472 IPR020472 -
Lja5g2192 609 Gene3D - 440 544 IPR015943 GO:0005515
Lja5g2192 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 397 438 IPR001680 GO:0005515
Lja5g2192 609 PANTHER BNAC04G01920D PROTEIN 105 538 - -
Lja5g2192 609 Gene3D - 111 184 IPR036285 -
Lja5g2192 609 Coils Coil 175 195 - -
Lja5g2192 609 MobiDBLite consensus disorder prediction 69 118 - -
Lja5g2192 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 397 434 - -
Lja5g2192 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 439 480 IPR001680 GO:0005515
Lja5g2192 609 SUPERFAMILY PRP4-like 124 177 IPR036285 -
Lja5g2192 609 MobiDBLite consensus disorder prediction 1 26 - -
Lja5g2192 609 Pfam WD domain, G-beta repeat 398 429 IPR001680 GO:0005515
Lja5g2192 609 Pfam WD domain, G-beta repeat 349 387 IPR001680 GO:0005515
Lja5g2192 609 Pfam WD domain, G-beta repeat 310 346 IPR001680 GO:0005515
Lja5g2192 609 Pfam WD domain, G-beta repeat 477 514 IPR001680 GO:0005515
Lja5g2192 609 Pfam WD domain, G-beta repeat 437 471 IPR001680 GO:0005515
Lja5g2192 609 ProSitePatterns Trp-Asp (WD) repeats signature. 374 388 IPR019775 -
Lja5g2192 609 MobiDBLite consensus disorder prediction 85 118 - -
Lja5g2192 609 SMART pr04_2 139 192 IPR014906 -
Lja5g2192 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 355 396 IPR001680 GO:0005515
Lja5g2192 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 439 473 - -
Lja5g2192 609 ProSitePatterns Trp-Asp (WD) repeats signature. 458 472 IPR019775 -
Lja5g2192 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 355 392 - -
Lja5g2192 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 481 523 IPR001680 GO:0005515
Lja5g2192 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 314 346 IPR001680 GO:0005515
Lja5g2192 609 MobiDBLite consensus disorder prediction 542 581 - -
Lja5g2192 609 PANTHER WD40 REPEAT PROTEIN 105 538 - -
Lja5g2192 609 MobiDBLite consensus disorder prediction 1 24 - -
Lja5g2192 609 CDD WD40 278 536 - -
Lja5g2192 609 Gene3D - 257 439 IPR015943 GO:0005515
Lja5g2192 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 481 514 - -
Lja5g2192 609 SMART WD40_4 307 346 IPR001680 GO:0005515
Lja5g2192 609 SMART WD40_4 390 429 IPR001680 GO:0005515
Lja5g2192 609 SMART WD40_4 517 606 IPR001680 GO:0005515
Lja5g2192 609 SMART WD40_4 432 471 IPR001680 GO:0005515
Lja5g2192 609 SMART WD40_4 263 304 IPR001680 GO:0005515
Lja5g2192 609 SMART WD40_4 348 387 IPR001680 GO:0005515
Lja5g2192 609 SMART WD40_4 474 514 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2192 359 534 U-box Gene Family AT2G33340 22.500 1.26e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2192 K12662 - gmx:100788948 804.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2192 5 35741389 35751446 Lja5g2192 5 35741389 35751446 ECH