Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2175 ATGTCAAATAGTAGGAATACTCATTGGTGTCATAGTTGCAGGAGGCCAGTTCGACTCGGATGGCGGGATTCGATTTGCCGTAGCTGTAATGAAGGATTTGTTCAAGAACTTGATGATATGGTGCCTGTTAACCCTCTAGACTTGGTTGGACTGGACAACAATGAAGAACATGGCCAAAGGTTTGGACTCATGGAAACATTCTCAGGATTTATGAGGCATCAAATGGGAAATAGAAGCCATAGGCATGACATCAGGGCACAACCAGATTCAATTCCTGAACAGGGTGCAGGGTTTGCTCCTTTGTTGATCTTCGGTGGCCAAATTCCTTTCAGATTGTCTGGACATGGTGGCATTGAAGCTCTCTTCAATGGGGCCCCAGGAATTGGAATGACACGAGGCAACACGGGTGATTATTTTATTGGTCCTGGGCTAGAAGAAATGTTTGAACAGCTCTCAATTAACAACCAGCAAGGCCCGCCACCCGCATCCAGGTCCTCTATAGATGCATTGCCTACTATCAGAATAGTGAAGAGGCATCTTCGGTCAGATTCACACTGCCCAATATGCAAAGAAAAATTTGAGTTGGGGTCTGAAGCAAGGCAAATGCCATGCAAGCATATGTATCACCCAGATTGTATTGTTCCCTGGTTGGTCAGGCATAACTCCTGCCCTGTTTGCCGTCAAGAATTGCCGCCGCAAGTATTGAGTGGCTCAAATGGTAGAAGAAGTAGAAGCAGTAATGCAAATGAAAGGGTAAGTAGTAGGGAGAACCAGGGAAGGCGAAATCCTTTTTCGTTCTTGTGGCCTTTCCGCTCTTCTATTTCTGGCAGTAATAATCGTGCAACTGGAAGAACCTCAACAACACCAACTCTCTCACAATAG 882 0.4569 MSNSRNTHWCHSCRRPVRLGWRDSICRSCNEGFVQELDDMVPVNPLDLVGLDNNEEHGQRFGLMETFSGFMRHQMGNRSHRHDIRAQPDSIPEQGAGFAPLLIFGGQIPFRLSGHGGIEALFNGAPGIGMTRGNTGDYFIGPGLEEMFEQLSINNQQGPPPASRSSIDALPTIRIVKRHLRSDSHCPICKEKFELGSEARQMPCKHMYHPDCIVPWLVRHNSCPVCRQELPPQVLSGSNGRRSRSSNANERVSSRENQGRRNPFSFLWPFRSSISGSNNRATGRTSTTPTLSQ* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2175 293 MobiDBLite consensus disorder prediction 232 261 - -
Lja5g2175 293 SMART ring_2 186 226 IPR001841 -
Lja5g2175 293 MobiDBLite consensus disorder prediction 268 293 - -
Lja5g2175 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 234 IPR013083 -
Lja5g2175 293 MobiDBLite consensus disorder prediction 230 293 - -
Lja5g2175 293 CDD RING-H2_RNF126_like 186 227 - -
Lja5g2175 293 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Lja5g2175 293 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 2 288 - -
Lja5g2175 293 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Lja5g2175 293 SUPERFAMILY RING/U-box 166 233 - -
Lja5g2175 293 Pfam Ring finger domain 185 227 IPR001841 -
Lja5g2175 293 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2175 Lja-Chr5 34809449 34811758 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2175 121 242 C3H Transcription Factor Family AT5G01980 42.857 1.34e-27 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2175 K11982 - gmx:100787523 467.618