Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2134 ATGGAAGAACACGAAACGGCTTCATGGCTTCACGGTTCAATAGACGAAGATCCTGTTTTCGACCACCGAGATTTCTGCGCCGACATCCTCTGCCAGCTGACGGGTGCTAACGGCGGTCAGAATCACAGCGGTGTCGTGCAAGCCTCGGCCCGTGCGCCGCCGGAGCGAGCGGTGAATAGGATTCAGAACTTCACGTACTTCTCGAAGCACAGCGATGTGAAAGGTGAGCCACGGTCGGCGGCGACGAGGGAATTGACTGTGCTTGATTCGTGCGAGACTCCAATCGTGACGGCGGCTGCAGCTTCCAGGCTATCAGAGACCGTCAGGAGCTCGCCGGAATCCGGCCGCGGGAGCATGAGCGCTGCCGGAATAGCTGGGCCTTCGACGGCAACGTTCGACATGACTGTGACTTCATCGCCTGGCGGTTCTAGCGGGAGTGCTGAACCGGATCAGAAGGAACCGGTGGTGGACCGGAAGAGGAAGAGCCGGGAACTGGAGGAATCGGAGTTTCAAAGCGAGGATGTTGATTTTGAATCTCTGGAAGCTAAAAAACAAGGCCGTGGTGCGAAGAAATCTCGTGCCGCGGAGATCCATAATCTATCAGAGAGGAAGCGTCGAGATAGAATCAATGAAAAGATGAGAGCTTTACAAGAATTGATACCTCGGTGCAACAAGTCTGACAAAGCTTCAATGCTGGATGAAGCAATTGAATACTTGAAGTCACTGCAGTTACAAGTGCAGATGATGTCCATGGGATGTGGAATGGTGCCTATGATGTTTCCTGGAGTGCAACAGTATATGCCACCAATGGGAATGGGAATGGGGATGGGAATGGGAATGGGCATGGAAATGGGAATGGGAATGAACAGGCCAATAATGCCATTTCCAAACATGTTAACCGCCAATTCAGCTATGCCAGCAACAGCAGCAGCAGCTGCTCATTTGGGACCAAGGTTCCCTGTGCCTCCTTTCCAAAATATCCCCCATGTTCCTGCTGCACCTGATTCGTCCGGAATGCAGCAACCACCAAATCAGTCTGATCATGTGCTTAACTCATTTGCTACACTGCCTCCAGATCAATCACGCTTCCCAAACTTCACAGATCCTTTTCAACAATACCTTGGTTCCCATCAGGTACAGATACAGTTAATGCAGGCAATGAATCAACTGAATGTCAATAAGCCAAGTACCAGTAGGGGCCAAGAGAATCCAGAAAAGCATCAATCAGAAGAAACATGA 1239 0.5101 MEEHETASWLHGSIDEDPVFDHRDFCADILCQLTGANGGQNHSGVVQASARAPPERAVNRIQNFTYFSKHSDVKGEPRSAATRELTVLDSCETPIVTAAAASRLSETVRSSPESGRGSMSAAGIAGPSTATFDMTVTSSPGGSSGSAEPDQKEPVVDRKRKSRELEESEFQSEDVDFESLEAKKQGRGAKKSRAAEIHNLSERKRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGVQQYMPPMGMGMGMGMGMGMEMGMGMNRPIMPFPNMLTANSAMPATAAAAAHLGPRFPVPPFQNIPHVPAAPDSSGMQQPPNQSDHVLNSFATLPPDQSRFPNFTDPFQQYLGSHQVQIQLMQAMNQLNVNKPSTSRGQENPEKHQSEET* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2134 412 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 410 - -
Lja5g2134 412 Gene3D - 188 251 IPR036638 GO:0046983
Lja5g2134 412 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 196 271 IPR036638 GO:0046983
Lja5g2134 412 MobiDBLite consensus disorder prediction 102 206 - -
Lja5g2134 412 MobiDBLite consensus disorder prediction 103 117 - -
Lja5g2134 412 CDD bHLH_AtPIF_like 193 256 - -
Lja5g2134 412 Pfam Helix-loop-helix DNA-binding domain 198 243 IPR011598 GO:0046983
Lja5g2134 412 MobiDBLite consensus disorder prediction 390 412 - -
Lja5g2134 412 MobiDBLite consensus disorder prediction 130 146 - -
Lja5g2134 412 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 193 242 IPR011598 GO:0046983
Lja5g2134 412 SMART finulus 199 248 IPR011598 GO:0046983
Lja5g2134 412 MobiDBLite consensus disorder prediction 151 168 - -
Lja5g2134 412 MobiDBLite consensus disorder prediction 176 206 - -
Lja5g2134 412 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 410 IPR031066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2134 Lja-Chr5 29388058 29390142 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2134 1 248 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 43.071 5.84e-47 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja5g2134 HLH 5.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2134 - - lja:Lj0g3v0318189.1 505.368