Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2129 ATGATGGATCATGTGATTGGTGGCAAGTTTAAACTGGGAAGAAAAATTGGGAGTGGATCTTTTGGGGAACTCTATTTGGGTGTTAATGTACAAACTGGAGAGGAGGTTGCTGTTAAGCTGGAACCTGTGAAAACCAGGCACCCACAGCTTCACTATGAGTCAAAGTTGTATATGCTTCTTCAAGGAGGAACGGGGATTCCCCATCTCAAGTGGTTTGGAGTTGAGGGAGACTACAATGTCATGGTTATTGACCTTCTTGGACCAAGTCTGGAAGATTTATTCAATTATTGTAACCGGAAGTTCACATTGAAGACAGTGTTAATGCTTGCTGATCAATTAATTAACAGAGTTGAGTATATGCATTCAAGAGGTTTCCTTCACCGTGACATTAAGCCAGACAATTTTCTGATGGGCCTAGGACGTAAAGCAAATCAAGTGTACGCCATTGACTTTGGCCTTGCGAAAAAATATAGGGATCTTCAGACTCACAGACATATACCATACAGGGAAAACAAGAACCTTACAGGCACAGCACGCTATGCAAGTGTCAACACTCATCTTGGAATTGAACAAAGCAGAAGGGATGATCTGGAATCTCTTGGTTATGTGCTCATGTATTTCCTAAGAGGAAGTCTTCCCTGGCAAGGATTGAGGGCTGGCACCAAAAAACAGAAATATGATAAAATCAGTGAGACAAAGGTGTCAACTCCCATAGAGCTTCTCTGCAAATCATATCCCTCTGAGTTTGTATCATACTTCCACTATTGCCGATCATTGAGGTTTGAGGACAAGCCAGATTACTCATATTTAAAGAGACTTTTCCGAGATCTATTTATTCGAGAAGGCTATCAGTTTGACTATATTTTTGACTGGACTATGTTGAAGTATCCACAGATTAGTGGCAGCTCTAGAGGGCGGCATGGATCTGGCAAGGCAGCTATGAATCCGGCTACACCTTTACAACGGCAAGAAAAGATCTCAGTTGGAAAAGAGATTCGGGAGAAATTCTCTGGTGCTGTGGAAGCCTTCTCCCGAAGGAACCACACAAGTGCTTCTCCTCATGTTGATCATGCCAGACATAGGACTTATGAGGATGTACCAGTGCACAAGGATTTGCATTATACCCAGCACACATCCACACGGCATGCCAGCACTTCAAAAAGAGCCATGGTCTCATCAAACAAGCCACTTTCTTCAGGCGACTATACAGGCAGGCTAACCTCAGGTAGTAGCGGCCGTCCATCCAACACACATCACAGAATTCAAACTGGGTATGAGGCTAAACAAGCAACTTTAACTCGCAACGGGTCTATTAGAGGCACCCGTGATGATCCTCTGAGGAGCTTTGAGCACCTCAATATCAGGAAGTAA 1371 0.4362 MMDHVIGGKFKLGRKIGSGSFGELYLGVNVQTGEEVAVKLEPVKTRHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKFTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYAIDFGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLRAGTKKQKYDKISETKVSTPIELLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYIFDWTMLKYPQISGSSRGRHGSGKAAMNPATPLQRQEKISVGKEIREKFSGAVEAFSRRNHTSASPHVDHARHRTYEDVPVHKDLHYTQHTSTRHASTSKRAMVSSNKPLSSGDYTGRLTSGSSGRPSNTHHRIQTGYEAKQATLTRNGSIRGTRDDPLRSFEHLNIRK* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2129 456 MobiDBLite consensus disorder prediction 302 323 - -
Lja5g2129 456 Pfam Protein kinase domain 11 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2129 456 ProSiteProfiles Protein kinase domain profile. 10 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2129 456 CDD STKc_CK1_delta_epsilon 9 283 - -
Lja5g2129 456 PANTHER CASEIN KINASE I-LIKE 2 440 - -
Lja5g2129 456 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Lja5g2129 456 PANTHER CASEIN KINASE-RELATED 2 440 - -
Lja5g2129 456 MobiDBLite consensus disorder prediction 378 421 - -
Lja5g2129 456 SUPERFAMILY Protein kinase-like (PK-like) 5 291 IPR011009 -
Lja5g2129 456 SMART serkin_6 10 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2129 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Lja5g2129 456 MobiDBLite consensus disorder prediction 376 421 - -
Lja5g2129 456 Gene3D Transferase(Phosphotransferase) domain 1 1 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2129 Lja-Chr5 29052167 29061054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2129 9 214 MAP Kinase Kinase Kinase AT3G06030 25.926 7.60e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lja5g2129 Pkinase 9.6e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2129 K08960 K08959 gmx:100789031 809.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2129 5 29052167 29061054 Lja5g2129 5 29052167 29061054 ECH
Lja1g1017 1 10096013 10103620 Lja5g2129 5 29052167 29061054 PCT