Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2122 ATGAAGTGGCTACGCGCAGGAGGGGAAACATTGGGAGGAGCAGATGAAGTTTTCCCTTCATCTGAATCTATTGTAACCAAGGATTTTTCCATCAGTGGGCCATCGGGCCTTGCCGGACAAGTTGATAAGAAGCCGGATACGGGGAATATAGAAGAAGCTGAATCATCTTTACGTGAGAGTGGCGTCTTGAACTATGAGGAAGCTAGAGCTCTGCTGGGAAGATATGAATATCAGAAAGGAAATTTAGTAGCCGCCTTGCATGTCTTTGAGGGAATAGATATAAGTGCCGTGACTCCTAAGATCAAACTTGCCCTTTCTAGAAACAGAGAACACCAGAAGAGACGTTCCCAGAATCACGATGAGCCGCAAATGTCTATACATGCTGTTGGCTTGCTGTTGGAAGCAGTCTTCCTAAAAGCAAAATCTCTGCATGTTCTTGGAAGGTTTAAAGAAGCTGCCGTATCTTGCAAAGTTATTCTGGACATAGTGGAGTCTTCATTGCCCGAAGGCTTGCCTGATAATTTTGGTGCTGAATGTAAATTGCAGGAGACCTTGAGCAAGGCAGTTGAGCTGCTTCCCGAGTTATGGAAACTTGCTGATTGTCCGCGCGAAGCAACTTTATCTTACCGGCGAGCGCTCCTTCATCATTGGAATCTTGATGCAGAGACTATAGCGAAGATTCAGAAAGAATTCGTTGTTTTTCTTCTATACAGCGGAGGGGAAGCAGCACCCCCTGATCTCCGTTCCCAAATGGACGGCTCATTTGTGCCGCTAAACAACATAGAAGAGGCTATTCTTCTTTTAATGATTTTGCTAAGAAAAGTCTCTCTCAATAGAATTGAGTGGGATCCTTCAATTTTGGACCACCTTTCATTCGCTCTTTCTGTTTCAGGGGATTTGACATCTTTAGCTAATCAATTGGAAGAATTGCTCCCTGGGACTATCGATAAAAGAGAAAGGTACCATGCTCTTGCTCTCTGTTATTATGGAGCAGGTAAGGACTTGGTAGCACTGGATCTTCTCAGAAAATTATCGAGTAATAGAAAGGAACCAAAACATGTTCCAGGTTTGTTATTGGCTTCTAAGATTTGTTCTGAGAATCCCAGTCTAGCCGAAGAAGGAGTAAGATTTGCTCAAGGAGTTCTTGAGAGTTTAGATGGCAGGTGTAATCAGTTAAAAAATCTCGTTGAATTTTTTCAAGGTGTTTCATTGTCAGCAACCTCGAAATTGCCTGTTTCTGATTCTGAGAGGCTTAAGAGACAATCTGAGGCGCTTCATGCCTTGGAAAATGCTGCCAGAACGAGTAAAATGAGAGATCCCCTTGTGCTATATCATCTCAGTTTAGAATATGCAGATCAAAGGAAGTTGGACTCGGCACTTCATTATGCAAAGTGCCTTTTAAAACTGGAAGGTGGTGCTAATGTTAAAGGGTGGTTATTGTTAGCTCGGATATTATCCGCTGAAAAACGGTTTGTGGATGCTGAATCTATTATCAATGCTGCGTTGGATCAGACTGGGAAATGGGATCAGGGTGATTTGTTGCGAACAAAAGCTAAACTTCAAATTGCACAGGGCCAGTTAAGGAGTGCCATTGAGACATATACCCAGCTTCTTGCTGTCCTTCAAATCCAGAGTAAAAGTTCTGGTTCCTGGAAGAAGTTATCTAAGGACACTAGAGATCGTTCTAGGAACTTGGAATTGGAAATATGGCATGATCTTGCTCATGTGTACATCAGTCTTTCACAGTGGCATGATGCAGAGGTGTGTCTTTCAAAATCCAAGGCCATCAAACCATACTCAGCTTCTCGATGTCATGCATCAGGTATGATGTATGAAGCAAAGGGTCTTTACAAGGAAGCTCTGACAGCTTTTCGCGAAGCTTTGGACATTGATCCCGATCATGTCCCCAGCTTAATCTCCACTGCTCTAGTTCTCAAACGATGCACTAATCCATCAAATCCAGCGGTCAGGAGCTTTCTGATGGACGCGCTACGGCACGACAGGTTGAATGCTTCTGCTTGGTATAATCTTGGCCTTCTTCACAAGGCTGAGGGAACAGCATCATCAGTGGTTGAAGCTGCAGAGTGTTTTCAGGCAGCATACTCTCTCGAAGAATCGGCACCGGTTGAACCTTTCAGATGA 2142 0.4379 MKWLRAGGETLGGADEVFPSSESIVTKDFSISGPSGLAGQVDKKPDTGNIEEAESSLRESGVLNYEEARALLGRYEYQKGNLVAALHVFEGIDISAVTPKIKLALSRNREHQKRRSQNHDEPQMSIHAVGLLLEAVFLKAKSLHVLGRFKEAAVSCKVILDIVESSLPEGLPDNFGAECKLQETLSKAVELLPELWKLADCPREATLSYRRALLHHWNLDAETIAKIQKEFVVFLLYSGGEAAPPDLRSQMDGSFVPLNNIEEAILLLMILLRKVSLNRIEWDPSILDHLSFALSVSGDLTSLANQLEELLPGTIDKRERYHALALCYYGAGKDLVALDLLRKLSSNRKEPKHVPGLLLASKICSENPSLAEEGVRFAQGVLESLDGRCNQLKNLVEFFQGVSLSATSKLPVSDSERLKRQSEALHALENAARTSKMRDPLVLYHLSLEYADQRKLDSALHYAKCLLKLEGGANVKGWLLLARILSAEKRFVDAESIINAALDQTGKWDQGDLLRTKAKLQIAQGQLRSAIETYTQLLAVLQIQSKSSGSWKKLSKDTRDRSRNLELEIWHDLAHVYISLSQWHDAEVCLSKSKAIKPYSASRCHASGMMYEAKGLYKEALTAFREALDIDPDHVPSLISTALVLKRCTNPSNPAVRSFLMDALRHDRLNASAWYNLGLLHKAEGTASSVVEAAECFQAAYSLEESAPVEPFR* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2122 713 PANTHER PROTEIN NPGR2 1 713 - -
Lja5g2122 713 Gene3D Tetratricopeptide repeat domain 247 554 IPR011990 GO:0005515
Lja5g2122 713 SMART tpr_5 133 166 IPR019734 GO:0005515
Lja5g2122 713 SMART tpr_5 601 634 IPR019734 GO:0005515
Lja5g2122 713 SMART tpr_5 475 508 IPR019734 GO:0005515
Lja5g2122 713 SMART tpr_5 671 707 IPR019734 GO:0005515
Lja5g2122 713 SMART tpr_5 511 544 IPR019734 GO:0005515
Lja5g2122 713 SMART tpr_5 440 473 IPR019734 GO:0005515
Lja5g2122 713 SMART tpr_5 567 600 IPR019734 GO:0005515
Lja5g2122 713 Pfam Tetratricopeptide repeat 602 634 IPR019734 GO:0005515
Lja5g2122 713 MobiDBLite consensus disorder prediction 35 55 - -
Lja5g2122 713 SUPERFAMILY TPR-like 418 540 IPR011990 GO:0005515
Lja5g2122 713 Pfam Tetratricopeptide repeat 448 504 - -
Lja5g2122 713 ProSiteProfiles TPR repeat profile. 601 634 IPR019734 GO:0005515
Lja5g2122 713 Gene3D Tetratricopeptide repeat domain 555 710 IPR011990 GO:0005515
Lja5g2122 713 PANTHER PROTEIN NPG1 1 713 IPR043376 -
Lja5g2122 713 SUPERFAMILY TPR-like 513 704 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2122 Lja-Chr5 28957133 28963083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2122 8 713 Calmodulin-binding Proteins AT4G28600 59.444 0.0 788
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2122 K21843 - gmx:100800762 1132.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2122 5 28957133 28963083 Lja5g2122 5 28957133 28963083 ECH
Lja5g2122 5 28957133 28963083 Lja1g1008 1 10016733 10022582 PCT