Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2114 ATGGCGCCTCCCAATCCAAAAGTTGTAGCGGCCTACCGTGCAATGGCACCTCTTGGGATCACTGAATCACAAGTGAAACCAGCATTAAAGAAACTCCTCAAACTGTATGATAAAAAATGGGAACTTATTGAGGAAGATAACTATAGAGCTCTACTCGATGCTATATTTGATGATGACGGACCTAAGGAGCCAGAACAGGTGCCAGAACAGAAAAAGAGAAGCAAGAAAGTTAATGAAGAAGAGATGGAGTATGAAGAAGCGCAGATGCATGTTGAATCAGCCCGACCTTTGAAAAAGCTACGTTTAAGAGGCCAAGAGAGTCAGCCTTTGCATCCTCTGTCAAACAGTTCTCCTAGCTCAGCTGGCCCTTCAGTAAGGAACGATGCACAACCGGTTTCATCACAAGATGGTATTGTTGACAAGGGAAAGCAATCTGTATCTCCCCAAGTTTCTCTCAGAGGGAGAAGACATATATCTGAAAGGGCATCACAAACAGTTGACCAAGGAAAGTTTCTGTTGTCGGACAACCAAATGCCTCATACTCATGCAATGATCATACCCAAGGATGAACCTATTGATGAATTGCCTGATTATGAGCTTCCCATTTCTGTGATTCCTCCTCAACCTGATCCATCAAGTTTAAGGGGCTCATCAGTGAAGAATGGTGTAACTGGAATGAAAGATGGCCATGTTAACGCGGCATCATCACACCGCAGTGATGGAGATATTCTTCATTCGTCGAATGAAGAAGCAACATCTAATGTAGAGATAGCATCTTCAACTCTGGGAGAAGTGAAACTTTCTCTGAGCTGCAGCTCAGCTCTCTGGGGACCAGATTTTCATATGCCTAGTCGAGATCATCTTCTAGAAATGCTGGAGGATAAGTGTCTGCGATCATATAAAATCACTGACCCAAAGTTTTCTGTTCAGAACCTGTTGAAAGATATATGTGACTGCATGCTGGAACTCAGATCTAATTCAAATGATGACTCACAAGAATGTTCTTTAACAAGGGTTGATACATTAAAGGAATCTGAGGCACATGGCACTAGTGTTGGGGAAAATAAAAATCTGGACGTGTTTACTCATTCATCAAATGGATCAATCAATATTAAGTCATCTGCAAATATTGTTTCACCCCGAAGTCCCTTTTCTTTAGCTGACCTGAATGGTCTGGATGATACCATAGCAGTTACGAATATTTTTTCACAAAATGATGTCAGAAAGGAGTTGGAGGATCCAAATTCACGTAGTTTAGTGGTTGTTCCTCAGCATCAGCTTACAGAAGATAATATTAGGTCATTTCATGATGTTAATGATCTTACCAAAGGAGAAGAAAATGTTCAAATTTCATGGGTGAATGAAGCTACTAATGATTTCCTACCGTGTTTTAACTACATGCCCCAAAACCTTGTTTTCAAAGATGCTTGTGTTAACATTTCTCTATCTTGTATCGGGGGTGAGGATTGTTGTTCAACATGTCACGGCAATTGTGTCTTGTCGTCTACACCCTGTGCCTGTGCGAATAAAACTGGGGGTGAATTTGCATACACAGCTCAAGGCCTACTGAAGGAAGAGTTTTTGGAAGAGTGCATTGCCATCGGTCGCAACCCTCGTCAACATGACTTCTATTGCAAGGATTGCCCACTTGAAAGATACAAGACTGAGGGCTGTTTAGAACCATGTAAAGGACACTTAAAGAGGAAGTTTATTAAAGAATGCTGGAGCAAATGTGGCTGTGGTAAACTATGTGGAAATCGGGTTACCCAACGAGGAATTACTAGCAATTTGCAGGTATTTTTCACTTCAGAAGGAAAAGGATGGGGTCTTCGCACCTTAGAGGACCTGCCAAAAGGTGCATTTGTGTGTGAGTTTGTTGGAGAGATTTTAACCATTAAAGAGTTGCATGAGAGGAGCATGAAATGCACTGAAAACGGGAAACACACTTACCCCATTTTGCTAGATGCGGATTGGGATTCTGTATTTGTAAAAGATGAAAAAGCTCTATGCTTGGATGCAACATCCTTTGGTAACACTGCTAGGTTTATCAATCACAGATGCTATGATGCAAACTTGGTTGAGATCCCAGTCGAAGTTGAGACCCCAGATCATCACTACTATCATTTAGCCTTTTTCACTTCCCGAAAAATAGCTGCACAGGAAGAGCTCACTTGGGATTATGGCATTGACTTCCATGACCATGATCAACCTATAAAGCTGTTCGAGTGCAGATGTGGCAGTAAATTCTGCAGGAATATGAAGCGGTCAAATAGTAAGTTCAGTCTGCCCCTGATGGGTAATGGGTAG 2307 0.4183 MAPPNPKVVAAYRAMAPLGITESQVKPALKKLLKLYDKKWELIEEDNYRALLDAIFDDDGPKEPEQVPEQKKRSKKVNEEEMEYEEAQMHVESARPLKKLRLRGQESQPLHPLSNSSPSSAGPSVRNDAQPVSSQDGIVDKGKQSVSPQVSLRGRRHISERASQTVDQGKFLLSDNQMPHTHAMIIPKDEPIDELPDYELPISVIPPQPDPSSLRGSSVKNGVTGMKDGHVNAASSHRSDGDILHSSNEEATSNVEIASSTLGEVKLSLSCSSALWGPDFHMPSRDHLLEMLEDKCLRSYKITDPKFSVQNLLKDICDCMLELRSNSNDDSQECSLTRVDTLKESEAHGTSVGENKNLDVFTHSSNGSINIKSSANIVSPRSPFSLADLNGLDDTIAVTNIFSQNDVRKELEDPNSRSLVVVPQHQLTEDNIRSFHDVNDLTKGEENVQISWVNEATNDFLPCFNYMPQNLVFKDACVNISLSCIGGEDCCSTCHGNCVLSSTPCACANKTGGEFAYTAQGLLKEEFLEECIAIGRNPRQHDFYCKDCPLERYKTEGCLEPCKGHLKRKFIKECWSKCGCGKLCGNRVTQRGITSNLQVFFTSEGKGWGLRTLEDLPKGAFVCEFVGEILTIKELHERSMKCTENGKHTYPILLDADWDSVFVKDEKALCLDATSFGNTARFINHRCYDANLVEIPVEVETPDHHYYHLAFFTSRKIAAQEELTWDYGIDFHDHDQPIKLFECRCGSKFCRNMKRSNSKFSLPLMGNG* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2114 768 Gene3D SET domain 441 753 IPR046341 -
Lja5g2114 768 ProSiteProfiles Pre-SET domain profile. 486 592 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja5g2114 768 Gene3D - 1 60 IPR043017 -
Lja5g2114 768 ProSiteProfiles SET domain profile. 595 728 IPR001214 GO:0005515
Lja5g2114 768 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 323 758 - -
Lja5g2114 768 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 126 265 - -
Lja5g2114 768 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 4 122 - -
Lja5g2114 768 Pfam Ubiquitin-binding WIYLD domain 7 59 IPR018848 GO:0018024
Lja5g2114 768 SUPERFAMILY SET domain 447 751 IPR046341 -
Lja5g2114 768 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 4 122 - -
Lja5g2114 768 Pfam Pre-SET motif 442 587 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja5g2114 768 SMART preset_2 438 579 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja5g2114 768 SMART set_7 595 734 IPR001214 GO:0005515
Lja5g2114 768 CDD SET_SETDB-like 462 728 - -
Lja5g2114 768 MobiDBLite consensus disorder prediction 108 152 - -
Lja5g2114 768 MobiDBLite consensus disorder prediction 106 164 - -
Lja5g2114 768 Pfam SET domain 607 728 IPR001214 GO:0005515
Lja5g2114 768 MobiDBLite consensus disorder prediction 57 90 - -
Lja5g2114 768 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 766 IPR025776 -
Lja5g2114 768 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 323 758 - -
Lja5g2114 768 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 126 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2114 Lja-Chr5 28780263 28787299 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2114 571 753 C2H2 Transcription Factor Family AT2G23740 38.624 2.25e-29 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja5g2114 Pre-SET 6.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2114 - - gmx:100787369 1031.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2114 5 28780263 28787299 Lja5g2114 5 28780263 28787299 ECH
Lja5g2114 5 28780263 28787299 Lja1g0993 1 9846306 9853449 PCT