Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2109 ATGTCAACGGCGTCTAAAGATGATAACTTGGCCCTTTCTTCTGAGGATTCTTCATCCCCAGATGAGTCTGAGCTTGATTTGGGTCTTGGGTTAAGCCTTTCTCACCATGCAAAGTCTCATCATCAACATGCCCCTTATGCTAGAATTTTCACAGCTAAGGATTTTTCTTCTTCAGCACCATCACCCTCCTCCTCCAACGTTGCTGCTGGGACCAAGAGAGCTGCTGAATCTCTTGTTGCTACTAACCGGCCCAGTCAAGTAGTTGGATGGCCTCCCCTTCCAGCATGTAGAATGAACAGCTTTAATAGCCAGGCCAAATCAACTGAAGTATTTGACCCTGTTGCTGAGAAGAGTAAGAGCAACAATACTGTGGTAAGGAAGGGTGCTGAAAATGGCAATGATAATAGCGTAATCAATATCAAAGACAAAAGACACATCAGGAGTTCCCCGTTCATCAAGGTAAACATGGACGGTACACCAATTGGAAGGAAAGTTGATTTGAGCGCCCATAGTTCCTATGAAACCTTAGCAGAAACATTGGAAGATATGTTTAATGAATCAACTGCATCCATCACTTGCAAAGGTTCAAATGGGGATGATCGTGGCATTATTTTTGGAGGAGAAAGGCATTCAAAGTTGTTGGATGGATCTTCCAAGTTTGTGCTCACTTATGAAGACAAGGAAGGAGATTGGATGCTGGTCGGGGATGTTCCTTGGGGGATGTTCACCGGTTCAGTGAGGAGACTACGGATCATGAGAACATCTGAGGCTAATGGACTTGCCCCAAGATTGGAAGAAAAGAACAGCAGACAGAAAAGCAAGCCCATATAG 831 0.4452 MSTASKDDNLALSSEDSSSPDESELDLGLGLSLSHHAKSHHQHAPYARIFTAKDFSSSAPSPSSSNVAAGTKRAAESLVATNRPSQVVGWPPLPACRMNSFNSQAKSTEVFDPVAEKSKSNNTVVRKGAENGNDNSVINIKDKRHIRSSPFIKVNMDGTPIGRKVDLSAHSSYETLAETLEDMFNESTASITCKGSNGDDRGIIFGGERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFTGSVRRLRIMRTSEANGLAPRLEEKNSRQKSKPI* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2109 276 Gene3D - 144 266 - -
Lja5g2109 276 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 9 266 IPR003311 GO:0005634|GO:0006355
Lja5g2109 276 PANTHER AUXIN-RESPONSIVE PROTEIN IAA11 9 266 - -
Lja5g2109 276 MobiDBLite consensus disorder prediction 1 26 - -
Lja5g2109 276 Pfam AUX/IAA family 21 263 IPR033389 -
Lja5g2109 276 SUPERFAMILY CAD & PB1 domains 146 252 - -
Lja5g2109 276 MobiDBLite consensus disorder prediction 1 18 - -
Lja5g2109 276 ProSiteProfiles PB1 domain profile. 149 256 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2109 Lja-Chr5 28747895 28752186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2109 144 263 B3 DNA Binding Superfamily AT1G59750 35.000 7.23e-15 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lja5g2109 AUX_IAA 6.6e-59 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2109 5 28747895 28752186 Lja5g2109 5 28747895 28752186 ECH
Lja1g0980 1 9734703 9738009 Lja5g2109 5 28747895 28752186 PCT