Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2108 ATGCAGCTGAAACCTCAGTTTTCCTTCTTCTTCTGTTGCATTTGGTGTTTCTCTTATGCTGCTTCTGCTAATGATGAAGCATCCACTTTGATTTCTATAAAAGCAGGTCTCAGTGATCCACTGAATAGTCTTCATGATTGGAAAATGTTGGATAAAGCACAAGCTCATTGTAATTGGACTGGTGTTCAGTGCAATTCAGCTGGAGCTGTAGAGAAGCTTGATCTCTCTCACATGAATCTGAGTGGAAGCATCTCCAATGAGATACAAAAGCTTAAAAGTCTCACTTCTCTCAACTTGTGCTGCAATGGATTTGAGTCATCGTTGTCAAAATCCATAGTCAATCTCACCTCACTGAAGAGTCTTGATGTGAGCCAGAATTTCTTCACAGGTGACTTTCCTTTAGGCCTTGGAAAGGCTTCAGGGCTTGTGACCTTAAATGCATCCAGCAACAATTTCTCTGGTTTTCTTCCTGAGGATCTTGGAAATGCCTCTTCCTTGGAGACACTTGATATCAGAGGCAGCTTCTTTGAAGGGTCAGTTCCGAAATCGTTCGCTGGCTTGAGTAAGTTGAAGTTTCTTGGTTTGTCTGGGAATAATCTCACTGGGAAGATCCCAGGAGAGCTGGGAAAACTTTCATCACTGGAGTATATGATCATTGGGTACAATGAGTTTGAAGGTGGGATTCCAGCAGAGTTTGGAAATCTCACCAATTTGAAGTATCTTGATTTAGCAGAAGGCAATCTTGGTGGTGAAATCCCTTCTGAGTTGGGAAAGCTTAGAGTGTTGGACACAGTTTTCTTCTACAAGAACAATTTTGAAGGCAAGATTCCACCAGAGATTTGCAATGTGACTTCATTGGTGCAGCTGGATCTCTCAGATAACATGTTATCTGGAAATATTCCAGCTGCGATAGGTCAGCTGAAGAATTTACAACTTCTGAACTTCATGCGAAACCGGTTATCCGGTCCCGTGCCTTCTGGCCTTGGGAGCTTGCCTCAGCTAGAGGTGCTTGAGCTCTGGAACAATTCGTTGTCAGGGTCACTGCCTAGTGATCTTGGCAAGAATTCCCCACTGCAGTGGTTGGATGTATCATCCAACTCACTCTCTGGTAAGATTCCAGAAACTCTTTGCAACAAGGGAAATCTCACCAAGCTTATACTTTTCAACAATGCCTTTTCCAGTCCAATTCCGGCAAGCCTATCAACGTGCCCTTCGCTCGTTCGTGTTCGAATCCAAAACAATTTTATATCCGGGACTATTCCTGTGGGTTTTGGCAAGCTTGGGAAGCTTCAAAGGCTAGAATTGGGTAACAATAGTCTTTCTGGTGAAATTCCCCGTGACCTTGCTTCTTCCACATCCCTTTCTTTCATAGATTTCTCCAGAAACAACCTGCACTCTTCTCTTCCTTCCTCTATTATTTCCATTCCAAATCTGCAAACTTTCATTGTCTCCAACAACAACTTGGATGGTGAAATCCCAGACCAATTTCAGGACTGTCCCTCACTCGGAGTCCTTGATCTCTCATCGAATCGTTTCTCTGGAAGCATTCCGCCAAGCATTGCTTCATGTCAGAAATTGGTGAAACTAAACCTGCAGAACAACCAATTGAGTGGTGATATCCCAAAAGCATTAGCAAGCATGACCACATTGTCCATTCTTGAACTTGCTAACAACTCTCTAACTGGTCAAATACCTGAAAACTTTGGTATGTCTCCTGCTCTAGAGACATTCAATGTTTCACACAACAAGCTAGAAGGTCATGTCCCAGAAAATGGCGCGCTAAAGACAATAAACCCAAATGATCTAGTAGGCAATGCTGGCCTATGTGGTGGTGTTCTCCCTCCATGTGGCAAAACCCCTGCATATTCATTTAGGCATGGGAGCTCAAATGCAAAGCACATCATTGTGGTATGGATAATTGGAATATCATCAATCTTTGCCATTGTGGTTGCAACTTTGGTTGCAAGATCTGTATACCTAAGGTGGTACACTGAAGGATGGTGCTTTGGAAGAAGATTTTCTAAAGGTAGCAAAGGATGGCCCTGGAGATTGATGGCATTTCAGAGGCTTGATTTTACAAGCACTGACATTTTATCCTGCATCAAGGAAACAAATGTGATTGGCATGGGCGCAACTGGGGTTGTTTACAAGGCTGAGGTACCACAATCAAGCACCGTTGTGGCAGTCAAGAAATTGTGGAGATCAGGATCTGATATTGAAGTAGGAAACAGTAGTGATGATCTTGTTGGAGAGGTGAATCTTTTAGGGAGGCTAAGGCATAGGAACATTGTTAGACTGCTAGGATTCCTTTATAATGACACTGATGTGATGATAGTTTATGAATTTATGCACAACGGAAACCTTGGAGATGCCTTGCATGGTAAACAAGCAGGGAGGTTGCTCGTAGACTGGGTTTCGCGGTATAACATAGCTCTAGGAATTGCTCAAGGACTTGCTTATCTTCATCATGATTGTCATCCACCCGTTATCCATCGTGACATCAAGTCAAACAATATACTGCTTGACGCAAATCTTGAGGCAAGGATAGCAGATTTTGGGTTAGCCAAGATGATGATCAGGAAGAACGAGACAGTCTCCATGATTGCTGGATCCTATGGATACATTGCCCCTGAATATGGATACTCCTTGAAGGTGGATGAGAAGATTGACATATATAGTTATGGAGTAGTTCTGTTGGAGCTTCTCACAGGAAAGCATCCTTTAGATCAAGAGTTTGTAGAATCTATAGACATTGTTGGATGGATTAGAAGCAAGATAGACAACAAATCTCCAGAGAAAGCATTAGACCCCAGTGTAGGAAACTGCAAGCTTGTTCAAGAAGAGATGCTTTTAGTTCTTAGAATAGCACTTCTTTGCACTGCTAAACTCCCCAAGGACAGACCCTCCATGAGGGATGTTATAATGATGCTAGGAGAGGCAAAGCCAAGGAGAAAGAACAGTGGCAGCAATGAAACATTAGCAGCTAGCAAGGAGAGGCTTGTGATTAACACATCATCACCGGTTAATGGCCTTCTGTAA 3039 0.4294 MQLKPQFSFFFCCIWCFSYAASANDEASTLISIKAGLSDPLNSLHDWKMLDKAQAHCNWTGVQCNSAGAVEKLDLSHMNLSGSISNEIQKLKSLTSLNLCCNGFESSLSKSIVNLTSLKSLDVSQNFFTGDFPLGLGKASGLVTLNASSNNFSGFLPEDLGNASSLETLDIRGSFFEGSVPKSFAGLSKLKFLGLSGNNLTGKIPGELGKLSSLEYMIIGYNEFEGGIPAEFGNLTNLKYLDLAEGNLGGEIPSELGKLRVLDTVFFYKNNFEGKIPPEICNVTSLVQLDLSDNMLSGNIPAAIGQLKNLQLLNFMRNRLSGPVPSGLGSLPQLEVLELWNNSLSGSLPSDLGKNSPLQWLDVSSNSLSGKIPETLCNKGNLTKLILFNNAFSSPIPASLSTCPSLVRVRIQNNFISGTIPVGFGKLGKLQRLELGNNSLSGEIPRDLASSTSLSFIDFSRNNLHSSLPSSIISIPNLQTFIVSNNNLDGEIPDQFQDCPSLGVLDLSSNRFSGSIPPSIASCQKLVKLNLQNNQLSGDIPKALASMTTLSILELANNSLTGQIPENFGMSPALETFNVSHNKLEGHVPENGALKTINPNDLVGNAGLCGGVLPPCGKTPAYSFRHGSSNAKHIIVVWIIGISSIFAIVVATLVARSVYLRWYTEGWCFGRRFSKGSKGWPWRLMAFQRLDFTSTDILSCIKETNVIGMGATGVVYKAEVPQSSTVVAVKKLWRSGSDIEVGNSSDDLVGEVNLLGRLRHRNIVRLLGFLYNDTDVMIVYEFMHNGNLGDALHGKQAGRLLVDWVSRYNIALGIAQGLAYLHHDCHPPVIHRDIKSNNILLDANLEARIADFGLAKMMIRKNETVSMIAGSYGYIAPEYGYSLKVDEKIDIYSYGVVLLELLTGKHPLDQEFVESIDIVGWIRSKIDNKSPEKALDPSVGNCKLVQEEMLLVLRIALLCTAKLPKDRPSMRDVIMMLGEAKPRRKNSGSNETLAASKERLVINTSSPVNGLL* 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2108 1012 Gene3D Ribonuclease Inhibitor 262 327 IPR032675 -
Lja5g2108 1012 Gene3D Ribonuclease Inhibitor 188 261 IPR032675 -
Lja5g2108 1012 Gene3D Ribonuclease Inhibitor 22 183 IPR032675 -
Lja5g2108 1012 Pfam Protein kinase domain 703 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2108 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 829 841 IPR008271 GO:0004672|GO:0006468
Lja5g2108 1012 Pfam Leucine rich repeat 476 536 IPR001611 GO:0005515
Lja5g2108 1012 Pfam Leucine rich repeat 404 464 IPR001611 GO:0005515
Lja5g2108 1012 Pfam Leucine rich repeat 165 223 IPR001611 GO:0005515
Lja5g2108 1012 PANTHER UNNAMED PRODUCT 3 988 - -
Lja5g2108 1012 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 3 988 - -
Lja5g2108 1012 Gene3D Phosphorylase Kinase; domain 1 701 786 - -
Lja5g2108 1012 ProSiteProfiles Protein kinase domain profile. 701 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2108 1012 ProSitePatterns Protein kinases ATP-binding region signature. 707 731 IPR017441 GO:0005524
Lja5g2108 1012 SMART serkin_6 701 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2108 1012 SUPERFAMILY Protein kinase-like (PK-like) 692 977 IPR011009 -
Lja5g2108 1012 SMART LRR_typ_2 331 355 IPR003591 -
Lja5g2108 1012 SMART LRR_typ_2 235 259 IPR003591 -
Lja5g2108 1012 SMART LRR_typ_2 475 498 IPR003591 -
Lja5g2108 1012 SMART LRR_typ_2 91 115 IPR003591 -
Lja5g2108 1012 SMART LRR_typ_2 499 523 IPR003591 -
Lja5g2108 1012 SMART LRR_typ_2 187 211 IPR003591 -
Lja5g2108 1012 SMART LRR_typ_2 283 307 IPR003591 -
Lja5g2108 1012 SMART LRR_typ_2 427 451 IPR003591 -
Lja5g2108 1012 SUPERFAMILY RNI-like 249 590 - -
Lja5g2108 1012 Gene3D Ribonuclease Inhibitor 328 622 IPR032675 -
Lja5g2108 1012 Gene3D Transferase(Phosphotransferase) domain 1 787 1002 - -
Lja5g2108 1012 Pfam Leucine rich repeat N-terminal domain 23 65 IPR013210 -
Lja5g2108 1012 SUPERFAMILY L domain-like 55 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2108 Lja-Chr5 28743346 28747093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2108 7 1012 Receptor kinase-like Gene Family AT1G08590 60.368 0.0 1157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja5g2108 Pkinase 1.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2108 - - gmx:100788430 1686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2108 5 28743346 28747093 Lja5g2108 5 28743346 28747093 ECH