Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2104 ATGGGTCTCTTGCAATTTCTCGATAAAATCTCAGCTTCAACTTCTTCTTCAGGATCGTCGATTGTCCTTTCGAACACGATCCTGGGTTTGCCTGTGTTGGAACTTGCAGCAATATGCGTGAACCTGACTCTTGTTCTGTTGTTTCTCTTTGTTGTATCGGTGAGACGGATTCTTGTGTACAAGGGTCGAGTTCGGATTGGTAAGGACAGCACCACCGGTGATGCCAGCCCGATTTGCAGTGTTATTAGTGGAGAAATACATGATGTTCGAATCGGTGCAGGGTTCAAGTTTTCTGTGTTGTGTTGTTTCTATGTTCTGTTTGTGCAAGTCTTGGTGTTGGGGTTTGATGGGGGTTCTTTGATTTGGGGTGAGGCTAGTGGGAAAGATGTGGATTGGTATCTTCTCTCTGTGCCAGCAGCTCAGGGTTTAGCTTGGTTTGTGTTGAGCTTCTCGGCTTTGTATTGCAAATTCAAGGAGGCAGAGAAGTTTCCATTTTTGTTGAGAGTTTGGTGGTTTTTTTCATTTGCTATTTGCTTGTGTACTTTATATGTTGATGGGAGAGGATTTTGGGTGGAAGGTTCCAAGCACCTCTCTTCTCATGCTGTTGCTAATTTTGCTGTCACCCCAGCTCTTGCCTTTTTGTGTGTAGTAGCAATTAGGGGTGTTACTGGTATACAAGTTTGTAGGATCTCTGATCTTCAAGAGCCATTACTTGTTGAAGAAGAACCGGGGTGTCTCAAGGTTACTCCTTACAGGGATGCTGGACTTTTTAGCTTGGCTACTCTTTCTTGGCTGAACCCGCTTCTTTCCATTGGCGCGATGAGACCGCTTGAGCTTAAGGACATACCCCTTATTGCGCCAAGAGATCGAACCAAGACCAGTTACAAGATTTTGAAATCTAACTGGGAGAGATTGAAGGCTGAAAACCCTTCTAAGCAGCCTTCATTAGCTTGGGCAATTCTCAAGTCATTCTGGAGGGAGGCAGCTCTGAATGCCATCTTTGCTGGTCTGAATACATTGGTGTCATATGTTGGTCCATACATGATAAGTTACTTTGTTGATTACTTGGGTGGCAAAGAGACTTTCCCTAATGAGGGATATGTCCTTACGGGTATATTCTTCGTGGCAAAGCTTGTGGAGACCTTGACAACTCGCCAATGGTATCTAGGAGTAGACATCATGGGTATGCATGTCAGGTCAGCTCTAACTGCAATGGTATACAGAAAGGGTCTCAGACTCTCAAGCTTTGCCAAGCAAAGTCACACAAGTGGGGAGATTGTCAACTACATGGCTGTTGATGTTCAGAGGGTAGGGGACTACTCTTGGTATCTTCATGACATGTGGATGCTTCCTCTGCAGATTGCTCTTGCTCTTGTAATTTTGTACAAGAATGTTGGAATTGCTTGTGTGGCAACATTGATTGCTACAATCGTTTCCATTGTTGTCACTATTCCTGTGGCTAGGATACAAGAAGAGTATCAAGACAAATTGATGGCTGCTAAGGATGAAAGAATGAGAAAAACATCTGAGTGTCTGAGGAATATGAGGATTCTAAAGCTGCAAGCTTGGGAGGACAGATATCGAATAAAATTGGAGGAAATGCGTGGAGTAGAGTTTAAGTGGCTTCGGAAAGCACTATATTCTCAAGCTTGCATAACTTTCTTATTCTGGAGCTCCCCTATATTTGTTTCAGCAGTCACTTTTGCTACTTGCATATTGTTGGGTGGTGAGCTGACTGCAGGTGGTGTTCTCTCTGCTCTAGCTACTTTCAGGATCCTCCAAGAACCTCTCAGAAATTTTCCTGACTTGGTGTCAACCATGGCTCAGACAAAGGTTTCTCTTGATCGCTTATCTGGTTTCCTGCAAGATGAAGAATTGCAGGAAGATGCAACTATCGTCTTGCCATGTGGCATTTCTAACATTGCCGTAGATATTGAGGATGGTGTCTTCTCCTGGGACTCTTATTCGTCTAGGCCAACTCTATCGGGAATACATATGAAAGTAGAAAAGGGGATGAGGGTGGCTGTTTGTGGCGTAGTTGGTTCTGGGAAATCAAGTTTTCTTTCTTGCATCCTTGGAGAGATTCCCAAGCTTTCTGGTGAAGTAAGAGTGTGTGGTTCAGCTGCATATGTCCCTCAATCAGCATGGATACAGTCAGGAAATATAGAAGAAAATATCCTGTTTGGCAACCATATGGACAAACCAAAGTACAAGAGTGTTCTTCATGCTTGTTCACTGAAAAAGGACCTAGAACTCTTCTCACATGGAGACCAAACAATTATTGGCGATAGAGGTATAAACTTGAGTGGTGGCCAAAAGCAGCGGATTCAGCTTGCACGAGCACTCTACCAAGATGCAGATATTTATCTCCTTGATGATCCCTTCAGTGCAGTTGATGCCCACACTGGATCAGAATTATTCAGAGAGTATGTATTGAATGCACTAGCAGATAAAACAGTTATTTTCGTGACCCATCAAGTTGAATTTCTTCCTGCTGCTGATATGATACTGGTTCTTAGAGAAGGCCAAATCATACAGGCAGGGAAGTATGATGATCTTTTACAGGCAGGAACAGATTTTAGAACTCTAGTTTCAGCTCACCATGAAGCAATTGAGGCTATGGACATTCCTACTCACTCCTCAGAAGATTCAGATGAAAATGTGTCCTTGGATGAATCCACTATAACCAGTAAGAATTCCATTTCCTCAGTAAATGATATTGACTGTTTGGCAAAGGAAGTTCAAAAGGGTTCATCAGATAAGAAAGCAATTAAGGAGAAGAAGAAAGCAAAACGCTCAAGAACAAAACAGCTTGTTCAGGAAGAGGAGAGGGTTAGAGGTAGAGTCAACATGAAGGTGTACTTGTCCTACATGGCTGCAGCGTATAAAGGCTTGTTGATTCCCCTCATAATCATTGCACAAACATTATTTCAGTTCCTTCAGATCGCTAGTAATTGGTGGATGGCATGGGCAAATCCTCAGACAGAGGGAGACCAACCCAAAGTAACTCCCATGGTTCTTCTTCTTGTTTACATGGGCCTTGCTTTTGGCAGCTCATTGTTCATATTTGTAAGGGCTGTTCTCGTGGCTACATTTGGCCTAGCATCTGCACAGAAGCTATTTTTCAACATGCTTAGAAGTATTTTCCGTGCACCAATGTCTTTCTTTGACTCTACACCAGCTGGAAGGATCTTAAATCGTGTTTCAGTTGATCAAAGTGTCGTGGATCTTGACATTCCTTTTAGACTTGGAGGTTTTGCTTCATCTACAATACAGCTTATTGGCATTGTTGCTGTAATGACAGAAGTTACATGGCAAGTTTTGCTCCTAGTAGTCCCAATGGCTGTTGTTTGTTTGTGGATGCAGAAATACTACATGGCTTCCTCAAGGGAACTGGTACGTATTGTAAGCATCCAAAAATCTCCAATTATTCAACTTTTTGGTGAATCAATTGCTGGAGCAGCCACCATCAGAGGTTTTGGACAAGAAAAAAGGTTCATGAAGAGGAACCTCTATCTTCTGGACTGTTTCGCACGACCATTCTTCTGCAGTATTGCAGCTATTGAGTGGCTCTGCCTGCGCATGGAATTACTCTCAACCTTTGTGTTTTCTTTCTGCATGGTATTACTAGTGAGCTTTCCCCGTGGAAACATTGACCCCAGTATGGCTGGACTTGCTGTGACATATGGCCTGAATTTGAATTCACGTCTATCACGGTGGATACTAAGCTTTTGCAAACTTGAAAACAAAATTATATCTATTGAAAGAATTTATCAATACAGCCAAGTTCCTAGTGAAGCACCTTCAGTTATTGAAGATTTTCGCCCTACATCCACTTGGCCTGAGAATGGGACAATCCAATTAATTGATCTAAAGGTCCGCTACAAGGAAAATCTTCCTTTGGTCCTTCACGGAGTATCCTGCACATTTCCTGGTGGGAAGAAGATTGGAATAGTTGGACGAACTGGCAGCGGAAAATCTACCTTGATTCAAGCATTGTTTCGATTGGTTGAACCGACATCTGGGAGTATCCTCATAGACAACATTAATATTTCAGGGATTGGCCTTCATGACCTTCGAAGCCATCTAAGTATCATACCACAAGATCCAACCTTATTTGAAGGCACCATTCGAGGCAATCTTGATCCTCTCGAAGAGCACTCTGATAAAGAGATTTGGGAGGCACTAGATAAGTCTCAGCTTGGAGAGATCATCCTTGAGAAAGAAGAGAAGCTTGACACTCCAGTGCTAGAAAATGGAGATAATTGGAGCGTAGGGCAGCGGCAACTTGTTTCTCTTGGCCGAGCGCTGCTTAAGAAATCAAAGATACTTGTACTTGATGAAGCAACCGCATCTGTTGACACTGCCACTGATAATCTTATCCAGAAGGTTATTCGACAAGAGTTTAGAGACTGCACTGTGTGCACGATTGCACATCGTATTCCTACTGTGATTGACAGTGATCTAGTTCTGGTCCTCAGTGATGGTCGAGTTGCGGAATTTGACACTCCATTACGGCTATTAGAGGATAAGGCATCCATGTTTCTGAAGTTGGTGACGGAATATTCATCCCGATCAAGTAGCATGCCAGATTTTTGA 4599 0.4297 MGLLQFLDKISASTSSSGSSIVLSNTILGLPVLELAAICVNLTLVLLFLFVVSVRRILVYKGRVRIGKDSTTGDASPICSVISGEIHDVRIGAGFKFSVLCCFYVLFVQVLVLGFDGGSLIWGEASGKDVDWYLLSVPAAQGLAWFVLSFSALYCKFKEAEKFPFLLRVWWFFSFAICLCTLYVDGRGFWVEGSKHLSSHAVANFAVTPALAFLCVVAIRGVTGIQVCRISDLQEPLLVEEEPGCLKVTPYRDAGLFSLATLSWLNPLLSIGAMRPLELKDIPLIAPRDRTKTSYKILKSNWERLKAENPSKQPSLAWAILKSFWREAALNAIFAGLNTLVSYVGPYMISYFVDYLGGKETFPNEGYVLTGIFFVAKLVETLTTRQWYLGVDIMGMHVRSALTAMVYRKGLRLSSFAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDMWMLPLQIALALVILYKNVGIACVATLIATIVSIVVTIPVARIQEEYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIKLEEMRGVEFKWLRKALYSQACITFLFWSSPIFVSAVTFATCILLGGELTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRLSGFLQDEELQEDATIVLPCGISNIAVDIEDGVFSWDSYSSRPTLSGIHMKVEKGMRVAVCGVVGSGKSSFLSCILGEIPKLSGEVRVCGSAAYVPQSAWIQSGNIEENILFGNHMDKPKYKSVLHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTGSELFREYVLNALADKTVIFVTHQVEFLPAADMILVLREGQIIQAGKYDDLLQAGTDFRTLVSAHHEAIEAMDIPTHSSEDSDENVSLDESTITSKNSISSVNDIDCLAKEVQKGSSDKKAIKEKKKAKRSRTKQLVQEEERVRGRVNMKVYLSYMAAAYKGLLIPLIIIAQTLFQFLQIASNWWMAWANPQTEGDQPKVTPMVLLLVYMGLAFGSSLFIFVRAVLVATFGLASAQKLFFNMLRSIFRAPMSFFDSTPAGRILNRVSVDQSVVDLDIPFRLGGFASSTIQLIGIVAVMTEVTWQVLLLVVPMAVVCLWMQKYYMASSRELVRIVSIQKSPIIQLFGESIAGAATIRGFGQEKRFMKRNLYLLDCFARPFFCSIAAIEWLCLRMELLSTFVFSFCMVLLVSFPRGNIDPSMAGLAVTYGLNLNSRLSRWILSFCKLENKIISIERIYQYSQVPSEAPSVIEDFRPTSTWPENGTIQLIDLKVRYKENLPLVLHGVSCTFPGGKKIGIVGRTGSGKSTLIQALFRLVEPTSGSILIDNINISGIGLHDLRSHLSIIPQDPTLFEGTIRGNLDPLEEHSDKEIWEALDKSQLGEIILEKEEKLDTPVLENGDNWSVGQRQLVSLGRALLKKSKILVLDEATASVDTATDNLIQKVIRQEFRDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPLRLLEDKASMFLKLVTEYSSRSSSMPDF* 1533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2104 1532 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 75 1532 - -
Lja5g2104 1532 Gene3D - 1269 1522 IPR027417 -
Lja5g2104 1532 Pfam ABC transporter 1303 1451 IPR003439 GO:0005524
Lja5g2104 1532 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 75 1532 - -
Lja5g2104 1532 CDD ABCC_MRP_domain1 643 843 - -
Lja5g2104 1532 Pfam ABC transporter 661 795 IPR003439 GO:0005524
Lja5g2104 1532 Pfam ABC transporter transmembrane region 332 597 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja5g2104 1532 Pfam ABC transporter transmembrane region 969 1211 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja5g2104 1532 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 329 609 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja5g2104 1532 SMART AAA_5 1312 1497 IPR003593 -
Lja5g2104 1532 SMART AAA_5 670 851 IPR003593 -
Lja5g2104 1532 CDD ABC_6TM_ABCC_D2 967 1261 IPR044726 GO:0140359
Lja5g2104 1532 ProSitePatterns ABC transporters family signature. 768 782 IPR017871 GO:0005524
Lja5g2104 1532 MobiDBLite consensus disorder prediction 875 894 - -
Lja5g2104 1532 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1286 1520 IPR003439 GO:0005524
Lja5g2104 1532 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 643 866 IPR003439 GO:0005524
Lja5g2104 1532 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 969 1239 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja5g2104 1532 SUPERFAMILY ABC transporter transmembrane region 966 1268 IPR036640 GO:0005524|GO:0016021
Lja5g2104 1532 Gene3D ABC transporter type 1, transmembrane domain 298 625 IPR036640 GO:0005524|GO:0016021
Lja5g2104 1532 Gene3D ABC transporter type 1, transmembrane domain 928 1267 IPR036640 GO:0005524|GO:0016021
Lja5g2104 1532 Coils Coil 490 510 - -
Lja5g2104 1532 Gene3D - 626 888 IPR027417 -
Lja5g2104 1532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1277 1511 IPR027417 -
Lja5g2104 1532 CDD ABC_6TM_ABCC_D1 330 617 IPR044746 GO:0140359
Lja5g2104 1532 SUPERFAMILY ABC transporter transmembrane region 318 625 IPR036640 GO:0005524|GO:0016021
Lja5g2104 1532 CDD ABCC_MRP_domain2 1284 1504 - -
Lja5g2104 1532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 640 865 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2104 Lja-Chr5 28657987 28667097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2104 654 859 Calmodulin-binding Proteins AT2G36910 32.000 2.23e-21 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2104 - - gmx:100781010 2628.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2104 5 28657987 28667097 Lja5g2104 5 28657987 28667097 ECH
Lja1g0976 1 9706833 9714800 Lja5g2104 5 28657987 28667097 PCT