Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2102 ATGGCGCTATGGATGGAAAAGGGTTCTGAGCCATTGACCGAAAGCGAGAAAGCAGACCTTGAAGCCATTGCTGCACTCAAAGAGTCCACAGCCATAGAACTCAAGGAAAAGGGTAACCAATTTGTCAAGATGGGTAACAAACATTACTCTGATGCCATTGATTGCTACACAAGGGCTATCAATCAGAATGCCTTGAGTCACTCTCAAACCTCTATTCTTTTTGCAAATAGAGCCCATGTCAATTTGATGCTTGGAAATCTTAGACGTGCTCTCACTGATGCTCACCAAGCACTCAACTTGTGCCCTACAAATATAAAGGCGATTTATAGAGCTGCCAAAGCATCATTTTCACTGAATTTGTTGGCTGAAGCACAAGACATTTGTCAAAAGGGTCTTCAGTTGGATCCCGATAATGAGGAATTGAAGAAGCTTAACCTGCAGATTGGTCTGAAGATATCAGAGAACAAAAAGCATGAGGCTGAAGTTTCCAAGGCTGTTGCAGAGGCAAAGGAGCTTGTGTCCGCAATAGAAAATAGAGGTTTGAAGATTGGGAAGGCGATGTATCGAGAACTAACTGGATTAAGGAAACCTGTGTTAGACAAAAATAATATCCTTCATTGGCCTGTGCTTCTTCTTTATGCAGAGGTTATGTCCAGTGACTTCATTGAGGATTTCTGTGAGGCTGACATGGTTTCGGTTCACCTTGATATGATGTTTGCAGAAGATCAGCCACTGCCTTGGGATGTTGATAACAATTACAAACGTGAATATATTGAACTATATTATGAGGGTTGCTCTGGACTTCGTTTATCTAAGAATGGACTTCTTCGTTGTCTATTAGAGGGAACTGTAGCTTCTGATGCGGAAGGTGTTGGTGATGAAGGGAAAGATGCAGTTGAGGATCTTAAGCAAAACTTGGGCTCCCCTAAATGGATCAAAGTAAATGAAAGGAGGCAACTTCATGATGTTCTTAAAGAGCCAAATTTCATCATTCCTGGGATCCCAGTCTTCTATGTTGTTTCTACACGATCCAGCTTTTATACCAAGTTCAAAGCTGGAAAGTGGGTTCCTCCGAGTATATGA 1083 0.4183 MALWMEKGSEPLTESEKADLEAIAALKESTAIELKEKGNQFVKMGNKHYSDAIDCYTRAINQNALSHSQTSILFANRAHVNLMLGNLRRALTDAHQALNLCPTNIKAIYRAAKASFSLNLLAEAQDICQKGLQLDPDNEELKKLNLQIGLKISENKKHEAEVSKAVAEAKELVSAIENRGLKIGKAMYRELTGLRKPVLDKNNILHWPVLLLYAEVMSSDFIEDFCEADMVSVHLDMMFAEDQPLPWDVDNNYKREYIELYYEGCSGLRLSKNGLLRCLLEGTVASDAEGVGDEGKDAVEDLKQNLGSPKWIKVNERRQLHDVLKEPNFIIPGIPVFYVVSTRSSFYTKFKAGKWVPPSI* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2102 360 Pfam Cns1/TTC4 Wheel domain 200 272 IPR044059 GO:0051879
Lja5g2102 360 SMART tpr_5 105 138 IPR019734 GO:0005515
Lja5g2102 360 SMART tpr_5 31 66 IPR019734 GO:0005515
Lja5g2102 360 SMART tpr_5 71 104 IPR019734 GO:0005515
Lja5g2102 360 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 1 356 - -
Lja5g2102 360 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 1 356 - -
Lja5g2102 360 SUPERFAMILY TPR-like 22 157 IPR011990 GO:0005515
Lja5g2102 360 Coils Coil 155 175 - -
Lja5g2102 360 Gene3D Tetratricopeptide repeat domain 26 149 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2102 35 160 Calmodulin-binding Proteins AT3G25230 32.117 1.48e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2102 K24927 - gmx:100783179 589.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2102 5 28631631 28636476 Lja5g2102 5 28631631 28636476 ECH